Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2143 ATGTCAAGTTCTCTTGCAGCAATAATAGGAGGAGCTGCAGGAGCCGCGGCATTGGTAGGGATATCGATAATACTTTTATGGTTTTGTTTGTTTCGCCAAACAAGCGTTTCTAGAACTTCAGAGACAGGTTCCTCTGATCCATCACAGGTGGGAAGACATGGTGGAATTGAGTTGCAAATGCGAGATACTAGGCGTTTTGCGATGGAAGAACTCTCTCACGCGACAAAGACTTTCACTGACAAAAACTTGATCGGAGTAGGGAAATTCGGTGAGGTTTACAAAGGCTTACTTCAAGATGGGATGCTTGTAGCCATCAAGAAGCGTGACGGTGTCAATAGTCAGGAATTCGTTGATGAGGTACGCTATCTTTCATCTATTCAACATCGGAATCTAGTTACTCTTATCGGATATTGCCAAGAAAACAATCTACAGTTTCTTATATACGAATACGTGCCTAATGGAAGCGTCTCCGGTCACTTGTATGGTGCTAGTCAACAACCACGAGAGAGGCTAGAATTCAAGCATAGACTCTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCATTCTTTGAGTCCGCGTTTGGTGCATAAGAATTTCAAAACATCTAATGTTCTTGTCGATGAAAACTTCATTTCTAAGGTCGCGGATGCAGGACTTCGTAACTTTCTAGGGAGAGTTGAAATTGTAGGCTCGTCTTCACAAGTGGCGTCAGATGAGATATTTCTTGCACCAGAGGTGAGAGAGTTCCGACAATTTTCTGAGAAGAGCGATGTGTATAGCTTTGGAGTATTTTTGTTGGAATTGTTGAGTGGGAAGGAAGCAACAGAATCACCCTCTATAAACACAAGTCAAAATCTGGTCGAATCGGTGCTAAGTAATCCAGACAGTAGCACCATGTCTGCAATCATAGATCAAAGAATGGAAAGTAGATTCACAGCTGAAGGCATGGAAAACTACATTCTACTCTTAATAAGATGTTTGGATCCTTCAAGCGAAAGAAGACCTTCGATGAGCTACGTCGAAACGGAACTCGACCGAATCCTCGAAAAAGAGATGAACTTAACAACAATGATGGGTGAAGGAACACCAACTGTAACACTTGGAAGTCAATTATTCAAATCAACTAAATAA 1140 0.4193 MSSSLAAIIGGAAGAAALVGISIILLWFCLFRQTSVSRTSETGSSDPSQVGRHGGIELQMRDTRRFAMEELSHATKTFTDKNLIGVGKFGEVYKGLLQDGMLVAIKKRDGVNSQEFVDEVRYLSSIQHRNLVTLIGYCQENNLQFLIYEYVPNGSVSGHLYGASQQPRERLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTSNVLVDENFISKVADAGLRNFLGRVEIVGSSSQVASDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEATESPSINTSQNLVESVLSNPDSSTMSAIIDQRMESRFTAEGMENYILLLIRCLDPSSERRPSMSYVETELDRILEKEMNLTTMMGEGTPTVTLGSQLFKSTK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2143 379 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Psa3g2143 379 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 379 - -
Psa3g2143 379 ProSiteProfiles Protein kinase domain profile. 78 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2143 379 SUPERFAMILY Protein kinase-like (PK-like) 59 345 IPR011009 -
Psa3g2143 379 Pfam Protein tyrosine and serine/threonine kinase 82 346 IPR001245 GO:0004672|GO:0006468
Psa3g2143 379 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 379 - -
Psa3g2143 379 Gene3D Phosphorylase Kinase; domain 1 50 150 - -
Psa3g2143 379 Gene3D Transferase(Phosphotransferase) domain 1 151 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2143 Psa-Chr3 189007820 189011853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2143 64 352 Receptor kinase-like Gene Family AT1G30570 39.116 3.67e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Psa3g2143 PK_Tyr_Ser-Thr 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2143 - - cam:101513575 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2143 3 189007820 189011853 Psa3g2143 3 189007820 189011853 ECH