Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2136 ATGTTGGTTATTTATGCTCTCATTGTTTGTTGTACTCTGATTAAGCAGACTAGTAAGAAAATTGAAGATGCTAAGTTGGCAAGAGATTTCCAAACCACATTGCAAGAATTCCAGAAAGTTCAACAGCTTGCTTCTGAGCGTGAATCAACTTACACTCCGGCTGCCCCTGCTTCTAACTTACCAACAAGCTCTGGCCCTGGTCAAGAATCGATTGAGATAGACCCGGAAAGCCAACCTTTTATCAGAGGGCAGATGAGGCAAGAGATAGTTCTATTGGATAATGAAATATCCTTCAATGAAGCCATGATTGAAGAAAGAGATCAGGGTCTTAGAGAGATTGAAGAGCAAATTGGAGAAGCAAATGAAATATTCAAGGACCTTGCTGTTTTGGTTCATGATCAGGGGATTGTTATTGATGACATTCAATCAAATATAGATACTTCTGCTGGTGCAACAGCTCAAGGTAAGGTCCAGCTAGTCAAAGCTTCCAAAAGTGTGAAATCCAAAAATAAATGGTGTTGGTGGGTGCTTTTAATTTTTGTGGCGGTGCTGAAATGTGTTGAAAGAGTGTATTGCGGCCTTTCCAAGTCCAGCAGCCAGCAGTTTGATGTCTTAAGCGCCACCCCCGTCCACCGTCTCACTTCTCTCCAATCCGCTGCCCTCCTTTTCCTCTTCTTAATCCTCTCCCTCTCTCTCCTCCTCCCTCTCCCTCTCTCCCCCGACTTCTCTTTCTCTCTCCTCGCCCTCCTCTTCCTCCTCCATTCCTCCCTCCAAAGTTCCCTCTCCTCTCTCCAAACCTCCTCCCTCGAAGCCAAATGCGACTCCGTTTCTTCCAATCTCTCCGCTCTCTCTTCCTTCCTCTGTCTCCTCCTCGCATGTTTCCCTCGTCTCTACCCCGCCGACGCCGCACTCGCTGCATCCATCTGTCTCCGTGGCCTATGGGCTCTTCAAACCGGTCTTTCTCTTTACGCCGAAGCCTTTATCCCGGAAGGCTGTCATCGTCTTCTCGACGTTGTTAACGGCGTCGAAGGATCGACGCAGTGTGATCTTGATGAGTCTAAGTTTAGAGCGCTTGCTATTCTTGATCTAGCTTTTGTTGTTCATGTTATGTTGGTTATGATCATTGTTTTGGTTGCTTATGCTGCTGTTGCCACTACTGTTGGGACTGTTAGAAGGGTTGGATCCTACGAGGCATTGCCTACTGCTACGTCTTCGCCCACGGAATCAAATCATATTCAGATGAAAGCTTTGGCTGGAACACAGGCTTGA 1269 0.4681 MLVIYALIVCCTLIKQTSKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPAAPASNLPTSSGPGQESIEIDPESQPFIRGQMRQEIVLLDNEISFNEAMIEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATAQGKVQLVKASKSVKSKNKWCWWVLLIFVAVLKCVERVYCGLSKSSSQQFDVLSATPVHRLTSLQSAALLFLFLILSLSLLLPLPLSPDFSFSLLALLFLLHSSLQSSLSSLQTSSLEAKCDSVSSNLSALSSFLCLLLACFPRLYPADAALAASICLRGLWALQTGLSLYAEAFIPEGCHRLLDVVNGVEGSTQCDLDESKFRALAILDLAFVVHVMLVMIIVLVAYAAVATTVGTVRRVGSYEALPTATSSPTESNHIQMKALAGTQA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2136 422 MobiDBLite consensus disorder prediction 45 68 - -
Psa3g2136 422 Pfam SNARE domain 137 184 IPR000727 -
Psa3g2136 422 Pfam Family of unknown function (DUF716) 243 381 IPR006904 -
Psa3g2136 422 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 100 162 IPR000727 -
Psa3g2136 422 PANTHER OS11G0534100 PROTEIN 199 422 - -
Psa3g2136 422 CDD SNARE_Qa 103 161 - -
Psa3g2136 422 SMART tSNARE_6 95 162 IPR000727 -
Psa3g2136 422 Gene3D - 94 189 - -
Psa3g2136 422 PANTHER OS11G0534100 PROTEIN 199 422 - -
Psa3g2136 422 SUPERFAMILY t-snare proteins 18 155 IPR010989 GO:0016020|GO:0016192
Psa3g2136 422 Gene3D - 13 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2136 Psa-Chr3 187927626 187932694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2136 18 180 SNARE and Associated Proteins AT5G46860 60.606 2.28e-60 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2136 - K08488 gsj:114389394 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2136 3 187927626 187932694 Psa3g2136 3 187927626 187932694 ECH