Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2125 ATGAGTTCTACGAAAGCAAAGAAGAAGCAAACGACAGGAACAACCAGCGAAACGACAACAACAACTACAACGACACAAGAACAGCAACAAACGGCATGGGGAGGAAGATACCTCGGAGTTCGAAGAAGACCATGGGGACGATACGCCGCTGAGATTCGCGATCCTTCGACGAAAGAAAGACACTGGTTAGGAACATTCGACACTGCTGAAGAAGCTGCTTTGGCTTACGATAGAGCCGCACGTGGCATGCGTGGGTCACGTGCTAGAACCAATTTTGTTTACGCCGATACACCTCCCGGTTCTTCTGTTACTCCAATCCTCTCCCCCGACCAACAACAACGACAAGAACAAGCTTTTCATGAACTTTCGTTTGTTCTTCAACATGAACCGTTTCCGGTTCAACATAACCCGGTTCCGTCTCTCGACTCGGTTTCTTTCGTAACATCCTCCGGTAATTACGGTTACGGTTATGGTGAGGAAAATAATAATAATAATAATAATAGTTATTTTAATAGTATTAATTTTAATAAATATAACCTTCCTCCTCAAGCTCCTCTTGCTACATTGGAAGCTAGTATTAATAATAATGAAAATTCCCATTTTAACCAACAAGTATTTTTTGATGATGTTGTTGTTAGTAGTAGCAACGTTAATTTTAACAACAACAACAACATTGAACTTCCTCCTTTGCCACCGGATATTACTAGCTCCGCGTGTTATGATCCGGCGTTCAACGGCGATGATAATGATCATGGGTATTATTATTCATCATGGGAGCAGAATGTTGGAGGTGATTGTTATAATAATCAAATGCTGGGTACAAATATTGGAGGTGCAGAGAGTAATGTTGTGGCGGGCTCTATTGATGGTTTTGATTTTGGAGGCTCTTCTTTTTTCTTCTGA 903 0.4142 MSSTKAKKKQTTGTTSETTTTTTTTQEQQQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARGMRGSRARTNFVYADTPPGSSVTPILSPDQQQRQEQAFHELSFVLQHEPFPVQHNPVPSLDSVSFVTSSGNYGYGYGEENNNNNNNSYFNSINFNKYNLPPQAPLATLEASINNNENSHFNQQVFFDDVVVSSSNVNFNNNNNIELPPLPPDITSSACYDPAFNGDDNDHGYYYSSWEQNVGGDCYNNQMLGTNIGGAESNVVAGSIDGFDFGGSSFFF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2125 300 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 299 - -
Psa3g2125 300 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Psa3g2125 300 MobiDBLite consensus disorder prediction 1 35 - -
Psa3g2125 300 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Psa3g2125 300 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Psa3g2125 300 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Psa3g2125 300 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Psa3g2125 300 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Psa3g2125 300 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 299 - -
Psa3g2125 300 MobiDBLite consensus disorder prediction 1 33 - -
Psa3g2125 300 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Psa3g2125 300 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2125 Psa-Chr3 187578682 187580129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2125 20 108 AP2-EREBP Transcription Factor Family AT5G13910 76.404 5.31e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g2125 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2125 K09286 - gmx:100792421 178.718