Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2122 ATGGAAGATTCATACATTGTCTTGCAGACATCACAAGGCAAAGGAGGTGCTTATTTTTATGATTTACACTTCTGGATTGGAAAGGATACAAGTCAGGATGAGGCTGGAACAACCGCCATTAAAGCTGTTGAGCTTGACATAGCTCTTGGAGGACGAGCTGTGCAACAGAGAGATTCAAGGACACGAGGGGGTGTCGCATCAGAATTTAGAAAACCTGAAGAGGAGGAGTTTGAAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTCAGATTGAAACAGGTCCCGTTTGCAAGGTCTTCATTGAACCATGATGATGTGTTCATTCTTGACACCGATAGTAAGATTTATCAATTCAATGGTGCAAATTCCAACATTCAGGAAAGAGCCAGGGCTTTGGAAATTATACAGTTTCTGAAAGAAAAATATCATGAAGGGAAATGTGATGTTGCAATTGTTGATGATGGAAAGTTAGACACTGAGTCAGATTCAGGATCTGCTGGTCCTGTCACCGATGAGAAAAAGGGAAAAGTTACAGCATTGCTAAAGCAACAAGGGATTGGTGTCAAGGGAATGACAAAAAGTACCCCAGTAAATGAGGAAAATCCATATTTGCTTGAAGAAGGTGGAAAGATGGAGGTATGGAGAATCAATGAAAGTGCTAAGACCTCATTGCTGAAGGATGATATTGGCAAATTTCATAGTGGAGATTGTTACATTGTACTGTACACATACCATTCTGGTGAGAGGAAAGAAGATTACTTCTTGTGCTGCTGGTTTGGCAAAGACAGCATTGAGGAGGACCAAACACTGGCTTTGAAATTGGCTAATACAATGTCCAACTCTTTGAAGGGTAGACCTGTTCAGGGTCGCATATTCGAAGTCCGTAAGGGAGGTTTGAGCACGGGATATAAAGAATTTGTAGCAGACAAAGGTTTATCAGATGAGACATACACTGAAGAATCTACCGCGCTTATCCGAATTTCTGGAACTTCCATCCATAACAATAATGCAGTGCAAGTTGATGTTGTGCCATCGTCATTGAATTCTACCGAATGTTTTGTCCTGCAATCTGGCTCTACAATTTTCACTTGGCATGGGAATCAGTGTTCCATTGAACAGCAGCAGCTAGCAGCAAAGGTCGCAGAATTTCTAAGACCAGGATTTGCTTTAAGTCCTGCTAAAGAAGGTACAGAAAACTCAGCTTTCTGGCTTCCACTAGGAGGAAAACAAAGCTACACTAGCAAGAAAGTTACTAATGAGGTAGAGGAGGTTTACAACTTCTCCCAAGATGATTTGTTAACAGGGACATCCACATGTGTAATATTTGGTCCAGATTTGAAATACCTGGCAGTTGCATCAATGGACCGGAATCTTAGAATATTTGGCCAACCTGATGAAGAGAAAATAGTTCAGCATCATCAATCAAGTGCAGTAGCAGATAAGTGCTTCCTCATCTCTTCATCATTCACTCTACCGCCACCGCCGTTTAAACTTCCAGTTCAGTTCCGGATAATGCTGATACGAAGAACTTTTGGTTTTTTGACAACAATTTTAACGCCCGGTAGTGACGGTTCCATGCCAAGACACAATGGAACTACTGATGTTCATGATAAAAATGAAACCCAACTTTCTTCATCCACTTCCAAGATTTCAGTTGATGATCAAGAGAAGAACGACTTTGCATCACAGCTGCTTCAAGCTTGTGATTCTCTTAGGCAGCAATCTTTCGTAAATTTGGATGGATATACTGCAGCAACTGGAGCATGTGCTGGAATAATTGCTATGTCCGCAACTTATCCAATGGATATGGTCTGA 1818 0.4125 MEDSYIVLQTSQGKGGAYFYDLHFWIGKDTSQDEAGTTAIKAVELDIALGGRAVQQRDSRTRGGVASEFRKPEEEEFETCLYVCRGKRVVRLKQVPFARSSLNHDDVFILDTDSKIYQFNGANSNIQERARALEIIQFLKEKYHEGKCDVAIVDDGKLDTESDSGSAGPVTDEKKGKVTALLKQQGIGVKGMTKSTPVNEENPYLLEEGGKMEVWRINESAKTSLLKDDIGKFHSGDCYIVLYTYHSGERKEDYFLCCWFGKDSIEEDQTLALKLANTMSNSLKGRPVQGRIFEVRKGGLSTGYKEFVADKGLSDETYTEESTALIRISGTSIHNNNAVQVDVVPSSLNSTECFVLQSGSTIFTWHGNQCSIEQQQLAAKVAEFLRPGFALSPAKEGTENSAFWLPLGGKQSYTSKKVTNEVEEVYNFSQDDLLTGTSTCVIFGPDLKYLAVASMDRNLRIFGQPDEEKIVQHHQSSAVADKCFLISSSFTLPPPPFKLPVQFRIMLIRRTFGFLTTILTPGSDGSMPRHNGTTDVHDKNETQLSSSTSKISVDDQEKNDFASQLLQACDSLRQQSFVNLDGYTAATGACAGIIAMSATYPMDMV* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2122 605 PANTHER VILLIN-3-LIKE ISOFORM X1 1 166 - -
Psa3g2122 605 PANTHER VILLIN-3-LIKE ISOFORM X1 164 436 - -
Psa3g2122 605 PANTHER VILLIN 1 166 IPR007122 GO:0051015
Psa3g2122 605 PANTHER VILLIN 164 436 IPR007122 GO:0051015
Psa3g2122 605 CDD gelsolin_S2_like 81 160 - -
Psa3g2122 605 Gene3D Severin 322 416 IPR029006 -
Psa3g2122 605 SUPERFAMILY Actin depolymerizing proteins 313 419 - -
Psa3g2122 605 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 78 247 IPR036180 -
Psa3g2122 605 SUPERFAMILY Actin depolymerizing proteins 204 331 - -
Psa3g2122 605 SUPERFAMILY Actin depolymerizing proteins 2 87 - -
Psa3g2122 605 PRINTS Gelsolin family signature 229 245 IPR007122 GO:0051015
Psa3g2122 605 PRINTS Gelsolin family signature 255 273 IPR007122 GO:0051015
Psa3g2122 605 PRINTS Gelsolin family signature 336 356 IPR007122 GO:0051015
Psa3g2122 605 PRINTS Gelsolin family signature 396 415 IPR007122 GO:0051015
Psa3g2122 605 Gene3D Severin 205 321 IPR029006 -
Psa3g2122 605 Gene3D Severin 1 79 IPR029006 -
Psa3g2122 605 Pfam Gelsolin repeat 336 386 IPR007123 -
Psa3g2122 605 Pfam Gelsolin repeat 2 57 IPR007123 -
Psa3g2122 605 Pfam Gelsolin repeat 90 157 IPR007123 -
Psa3g2122 605 Pfam Gelsolin repeat 230 294 IPR007123 -
Psa3g2122 605 CDD gelsolin_S4_like 205 294 - -
Psa3g2122 605 CDD gelsolin_S5_like 322 412 - -
Psa3g2122 605 Gene3D Severin 80 164 IPR029006 -
Psa3g2122 605 SMART VILL_6 210 311 IPR007122 GO:0051015
Psa3g2122 605 SMART VILL_6 79 170 IPR007122 GO:0051015
Psa3g2122 605 SMART VILL_6 321 410 IPR007122 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2122 Psa-Chr3 187299349 187301941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2122 435 477 U-box Gene Family AT1G04510 60.465 1.05e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2122 - - oeu:111375035 494.197