Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2102 ATGGGAACCCCACAGTCCAATCTCCCCCCAGGTTTCAGATTCCACCCTACTGACGCAGAACTCATTCTTCACTATCTTAGAAAAAAAATTGCTTCTATTCCCTTACCTGTTTCCATCATTGCTGAAGTTGATATTTACAAATTAGATCCATGGGATTTACCAGCTAAGGCTTTGTTTGGTGAGAAAGAATGGTACTTTTTCAGTCCTAGAGATAGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCTGCTGCTTCAGGGTATTGGAAAGCCACTGGAACTGATAAGACAATAGTTGCTTCATTGCCATGTGGAGGAAGATCACAAGAGAATATTATTGGTGTCAAAAAGGCACTTGTTTTTTACAAAGGAAAACCTCCAAAGGGTATTAAAACTAATTGGATTATGCATGAATATCGTCTCGTTGATAATAATAAACCAATTAAACTCAAAGATTCTTCTATGAGGTTGGATGATTGGGTATTATGTCGAATTTATAAGAAATCAAAATGCACGCTAACTTCAACCGAATCCGAGACAATGATAGGCGAAGTCGAGCATGCGGACGAGGCGCAATACAAAGAAACTCATTTTCCAATCACAAAAAACACAACATCTCCTCATCAAAACACACTCATGTCACAAAAATCAGTGTCTTTCTCAAACCTATTAGATGCTATGGACTACTCCATGCTAAGGAGTTTCTTATCCGAAAACCATTCCACCAATCCATCAGGAATTGGATCAAGTTCAAGCTTCAACAACACTGAAAACTTTAACCAACAACAACAACAATCTTCCCAAAACAACACTAGCAACAATTACATGTCACAAAACAAGAACCCTTTAAAGCACCATCTGTCAAACATAGATGAGGACAACAACATGTTATTGTACCCATCAAAGAAATACTTGAGTTCATCTTGCAATTTCTCTAACATCAATACACAATATGAAAGCTACCTCATGAAGCAATCTTTGATGAATCAACAATTGGTTTTAGGTCCTCATCATCAATATCAAGGATAA 1029 0.3771 MGTPQSNLPPGFRFHPTDAELILHYLRKKIASIPLPVSIIAEVDIYKLDPWDLPAKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPCGGRSQENIIGVKKALVFYKGKPPKGIKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKCTLTSTESETMIGEVEHADEAQYKETHFPITKNTTSPHQNTLMSQKSVSFSNLLDAMDYSMLRSFLSENHSTNPSGIGSSSSFNNTENFNQQQQQSSQNNTSNNYMSQNKNPLKHHLSNIDEDNNMLLYPSKKYLSSSCNFSNINTQYESYLMKQSLMNQQLVLGPHHQYQG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2102 342 Pfam No apical meristem (NAM) protein 9 141 IPR003441 GO:0003677|GO:0006355
Psa3g2102 342 SUPERFAMILY NAC domain 4 168 IPR036093 GO:0003677|GO:0006355
Psa3g2102 342 Gene3D NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Psa3g2102 342 ProSiteProfiles NAC domain profile. 8 168 IPR003441 GO:0003677|GO:0006355
Psa3g2102 342 PANTHER OS01G0104200 PROTEIN 5 295 - -
Psa3g2102 342 PANTHER NAC TRANSCRIPTION FACTOR 56 5 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2102 Psa-Chr3 185490049 185492158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2102 4 342 NAC Transcription Factor Family AT3G04070 49.008 4.00e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa3g2102 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2102 - - gmx:100301906 476.478