Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2078 ATGGCAATTGCACGCACTGGAGTCTACGTCGACGACTATTTGGAGTACGCTAACACGTTGCCCGCTGAGCTTCAGAGACTGCTTAACACCGTTCGGGAACTCGATGAACGATCCCAATCTATGATAAATCAGACTAGGCAGCAGACAAAGTACTGTATGGGGTTCTCATCTCATGGCTCTAAGAAGGGTAATCATAATCATAATTATAGTTATAATAATAATTACGCCAACGGCGACGATGATGCTTCTATTGAGAAACTGCTAAAAGAAATTGAGGCAAACCAGGATAGTGCTTTGAGTCTCTGCACTGAGAAGGTTTTGCTGGCACAGCAAGCATATGAACTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTCGCTGAAGATTTAAAGCAAGAGGGGAAAATACCGCCAGATGAGCCAGCCATTCTCCCTCCACTGCCTATTGTCCCTAAACCTGAAAAACGCAGGCACGGATATGGTACACCTCAATCAAAGAGACTTGATTACAGGGAAAGAGACTGGGATAGAGACTTTGAGCTAATGCCTCCACCAGGAGGCCATAAGAAGGATTATGCGACCCCTATGGATGTCGATCAACCCATTGATCCCAATGAACCTACATACTGTGTTTGTCATCAGGTGTCTTTTGGAGACATGATTGCTTGTGACAATGAAAATTGCCGAGGAGGTGAATGGTTCCACTATTCATGTGTTGGCCTTACCCAAGAAACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAGATTACAACCACACTGTTAA 801 0.4395 MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKGNHNHNYSYNNNYANGDDDASIEKLLKEIEANQDSALSLCTEKVLLAQQAYELIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKPEKRRHGYGTPQSKRLDYRERDWDRDFELMPPPGGHKKDYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLQPHC* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2078 266 SMART ING_2 9 130 IPR024610 -
Psa3g2078 266 CDD ING_plant 19 127 - -
Psa3g2078 266 Coils Coil 24 44 - -
Psa3g2078 266 Pfam PHD-finger 213 261 IPR019787 -
Psa3g2078 266 SUPERFAMILY FYVE/PHD zinc finger 189 262 IPR011011 -
Psa3g2078 266 PANTHER INHIBITOR OF GROWTH PROTEIN 2 263 IPR028651 -
Psa3g2078 266 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Psa3g2078 266 PANTHER PHD FINGER PROTEIN ING2 2 263 - -
Psa3g2078 266 ProSiteProfiles Zinc finger PHD-type profile. 211 263 IPR019787 -
Psa3g2078 266 Gene3D - 5 128 - -
Psa3g2078 266 SMART PHD_3 213 261 IPR001965 -
Psa3g2078 266 CDD PHD_ING 213 260 - -
Psa3g2078 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 263 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2078 Psa-Chr3 183316067 183318968 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa3g2078 ING 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2078 K11346 - gmx:100787916 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2078 3 183316067 183318968 Psa3g2078 3 183316067 183318968 ECH