Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2050 ATGATTGTAGAATCAGAGGCATCACTAAGGAAAGAATCAAAGAATGTAATAACATTTTTTGAAGTTGATTTTGAGAAGGGCAAAATGGTAGAAGTGGCGGAGTCAAAAGTGAATAAAGAACCAAAGGTAATAACACCATCCTTTCAATCTAAAGATTTATTTACTCTAATACTGAGGAGAAACACTAAGCTAACTTCCAATCTCTTACAGAAAGATGAACATTCAAGTTCATCGCAAAATACTATTGCTGAACTTTTACCTAAACAAGAAGTGAAAGAATTTTCTTGTCTGTTTTGTAATAAGAAATTTTCAAATTCACAGGCTCTTGGGGGACACCAGAATGCTCATAAGCGTGAACTTGATTTCAAAAAAATTGAGCAGAAAAGAAAAGAGGAAGAAATGAATTTCACCATAAATCATAGATCTAGTTTTTCACACCCTTTTCCTTATTCGGACCCTATTCACTATCAAGGATATCCTTATTTTCGCGACAACTTGCAACACTCAGTTGACACTCAAATGAACAATGTCATGCCTTCTTTACTTGATTCTCCGTCCGGTGGTTATGGAGGGATGTATATGCCAAATACACATTTCTCGCCACCTCCATTTTTTATGGAAGTTCCAAAGCCACCACTCACACCACCATACATTGGGATGACTAGTTTTTTGAATAGAAATCAAACGCTTGCATTGTCAATTCCTCAAAGGCCAAACACTATAGAATTGATACTTTCTAGTCAAGTTAACCAAACTCCTCCATCTGGTGAGAATGCAAAAAGAAACTCAGATGCTAAATTTATTTCTCATTATCTTCCAATGAAAACTCGGGATTTTATTGGAGGAATTCAATTTCTAGCAGAGGCCAATGTATCTTCATCATTAACAACTAAATCATCATCAGAGGAACTCGACTTGGATCTCAAACTTTAA 933 0.3548 MIVESEASLRKESKNVITFFEVDFEKGKMVEVAESKVNKEPKVITPSFQSKDLFTLILRRNTKLTSNLLQKDEHSSSSQNTIAELLPKQEVKEFSCLFCNKKFSNSQALGGHQNAHKRELDFKKIEQKRKEEEMNFTINHRSSFSHPFPYSDPIHYQGYPYFRDNLQHSVDTQMNNVMPSLLDSPSGGYGGMYMPNTHFSPPPFFMEVPKPPLTPPYIGMTSFLNRNQTLALSIPQRPNTIELILSSQVNQTPPSGENAKRNSDAKFISHYLPMKTRDFIGGIQFLAEANVSSSLTTKSSSEELDLDLKL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2050 310 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Psa3g2050 310 SUPERFAMILY beta-beta-alpha zinc fingers 92 121 IPR036236 -
Psa3g2050 310 PANTHER ZINC FINGER PROTEIN KNUCKLES 71 310 - -
Psa3g2050 310 Gene3D Classic Zinc Finger 69 146 - -
Psa3g2050 310 PANTHER ZINC FINGER PROTEIN JAGGED 71 310 IPR045320 GO:0003700
Psa3g2050 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2050 Psa-Chr3 182048657 182049589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2050 82 193 C2H2 Transcription Factor Family AT5G25160 35.714 2.89e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g2050 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2050 - - cam:101490368 151.369