Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2028 ATGTCCGAAAGAATCTCTATCGGAAATGCTGAAGATAAAATGTCAAAGTGCAAAATGATTGAAGAACCAGAGGCATCACTAAGGAGGGAATCAAAGAATGTAATAACATTCTCTGAAGTTGACTATGAGAAGGGCAAAATGGTAGAAGTGGCAGAGTCAAAAGTGAATAAAGAACTCAAGGTAATAACATCATTCATTCAATCTAAAGATTTAATTACTCTAACACTTAGGAGAAACACTAACTCAACTTCCAATCTCTTACAGAAAGATGAATATTCAAGTTCATCGCAAAATATTATTGCTGAAGTTGTACCTGAACAGGAAGTGAAAGAATTTCCTTGTCTTTTTTGTAACAAGAAATTTTCAAATTCACAAGCTCTTGGGGGACACCAAAACGCTCATAAGCGTGAACGTGATCTCAAAAAAATTGAGCAAAAAAGAAAAGAGGAAGAAATGGATTCCAGCATAAATCATAGATCTAATTTTTCACATCCTTATCCTTATTCAGACCCTACTCACTATCAAGGATATCCTTATTTTTATGACAACTTGCAACATCCAGTTGGCACTCAAATGAACAATGTCACGCCTTCTTTGTTTGGTTCTCCGTTTGGTGGTTATGGAGGGATGTATATGCCAAATACACCTTCCTCACCACCTCCATTTTTCATGCAAGTTTCAAAGCCACCACTCACACCACCATGCCTAGGGATGACTAGTTTTTTGGGTAGAAATCAAACTCCTGCACTGTCAATTTCTCAAAGGCCAAACACTATGGAATTCAGACTTTCTAGTCAAGTTAATCAGACTTCTCCATCGGGTGAGGATGCAGAAAGAAACTCAGATGCTAAATTTCTTTCTCATTATCTTCCAATAAAAACTCGTGATTTTATTGGAGGAAGTCAACTTCTAGCTGAAGTCAATGTATCTTCATCATCAACAACTGAATCAACATCAGAGGAACTCGACTTGGGTCTCAAACTTTAA 987 0.3688 MSERISIGNAEDKMSKCKMIEEPEASLRRESKNVITFSEVDYEKGKMVEVAESKVNKELKVITSFIQSKDLITLTLRRNTNSTSNLLQKDEYSSSSQNIIAEVVPEQEVKEFPCLFCNKKFSNSQALGGHQNAHKRERDLKKIEQKRKEEEMDSSINHRSNFSHPYPYSDPTHYQGYPYFYDNLQHPVGTQMNNVTPSLFGSPFGGYGGMYMPNTPSSPPPFFMQVSKPPLTPPCLGMTSFLGRNQTPALSISQRPNTMEFRLSSQVNQTSPSGEDAERNSDAKFLSHYLPIKTRDFIGGSQLLAEVNVSSSSTTESTSEELDLGLKL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2028 328 MobiDBLite consensus disorder prediction 308 328 - -
Psa3g2028 328 PANTHER ZINC FINGER PROTEIN KNUCKLES 91 328 - -
Psa3g2028 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Psa3g2028 328 PANTHER ZINC FINGER PROTEIN JAGGED 91 328 IPR045320 GO:0003700
Psa3g2028 328 SUPERFAMILY beta-beta-alpha zinc fingers 110 139 IPR036236 -
Psa3g2028 328 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Psa3g2028 328 Gene3D Classic Zinc Finger 84 164 - -
Psa3g2028 328 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2028 Psa-Chr3 180978224 180979210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2028 78 211 C2H2 Transcription Factor Family AT5G25160 37.037 5.52e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g2028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2028 - - cam:101490368 194.126