LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa3g2010	ATGGTTTTCTGTGATCACTGTGTCAAAGATGTTTTCGCGGAGCGCCACGATGATTGTTACTTAACTTGTAGTTCTTGTGGTAAGGTGCTGGAAGATCAGTATTTTACTGAGGAGCCGACTTTTGTTAAAAACTCGGCAGGAAAGAGCAAGTTATCGGGAAGTTATGTAAAAGCGGTTCTAAATGAGTTTTCTGTTTCACGTGAAAGGACTTTACATAGAGCTTCTAAAGAAATGGAGTACTTAAGTCTCAACCTTGGAGTAAGTGAGCAAGATATGATCCGCCAAGCTTTGGCCTTTTATGAAATAGCACTTGAAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACGTGCAGCATGTCTCTATATTGCATTCCGGCAAAACAAAAAGCCATACTTTCTCATTGACTTTTCAAATATTTTAAGGATAAATGTTTACATGCTTGGAGCAGTTTTTTTGCAGCTCTGTGAAGTGTTGAGGCTTGAAAATCACCCAATTGTTAAAAAGCCTATCGATCCTTGTCTTTATCTCTATAAATATACTAATAATTTGTTAGGCCATAGAAATGTGGCTGTCTCTGAAACCGCACTGAACATCATTGCGAGTATGAACCGCGACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGGTGCTGCATTATACATCTCTGCTCTTGCACATGGTCATAACTTCTCCAAGTCAGATATTGTGGAACTCGTCTAA	732	0.3948	MVFCDHCVKDVFAERHDDCYLTCSSCGKVLEDQYFTEEPTFVKNSAGKSKLSGSYVKAVLNEFSVSRERTLHRASKEMEYLSLNLGVSEQDMIRQALAFYEIALEKNFTRGRKSEQVRAACLYIAFRQNKKPYFLIDFSNILRINVYMLGAVFLQLCEVLRLENHPIVKKPIDPCLYLYKYTNNLLGHRNVAVSETALNIIASMNRDWMQTGRKPSGLFGAALYISALAHGHNFSKSDIVELV*	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa3g2010	243	PRINTS	Transcription initiation factor IIB signature	16	36	IPR000812	GO:0006352\|GO:0070897
	Psa3g2010	243	PRINTS	Transcription initiation factor IIB signature	119	138	IPR000812	GO:0006352\|GO:0070897
	Psa3g2010	243	PRINTS	Transcription initiation factor IIB signature	213	229	IPR000812	GO:0006352\|GO:0070897
	Psa3g2010	243	SUPERFAMILY	Cyclin-like	172	242	IPR036915	-
	Psa3g2010	243	Gene3D	-	64	165	-	-
	Psa3g2010	243	PANTHER	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	1	243	IPR000812	GO:0006352\|GO:0070897
	Psa3g2010	243	PANTHER	TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT	1	243	IPR029529	GO:0000126\|GO:0000995\|GO:0006383
	Psa3g2010	243	CDD	CYCLIN	96	144	IPR013763	-
	Psa3g2010	243	Gene3D	-	173	243	-	-
	Psa3g2010	243	SUPERFAMILY	Cyclin-like	77	164	IPR036915	-
	Psa3g2010	243	Pfam	Transcription factor TFIIB repeat	172	242	IPR013150	GO:0017025
	Psa3g2010	243	Pfam	Transcription factor TFIIB repeat	68	157	IPR013150	GO:0017025
	Psa3g2010	243	SUPERFAMILY	Zinc beta-ribbon	2	45	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa3g2010	Psa-Chr3	179046117	179051146	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa3g2010	1	243	Inorganic Solute Cotransporters	AT2G01280	40.726	1.85e-53	177

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa3g2010	K15196		-	gmx:100817609	339.347