Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2001 ATGGAAGATAAGATGCAACCTGACCCCCCCAACAACACTCCAAACCAACATGTTTCCGAGAAAAACGAACCGGTTAGGTCAAGGTGGACACCAAAACCAGAACAAATTCTCATACTTGAGTCCATCTTCAACAGTGGCATGGTGAATCCCCCCAAAGAAGAAACTATAAAAATAAGAAAACTTCTTGAGAAATTCGGCAACGTCGGCGACGCCAACGTCTTCTACTGGTTCCAAAACCGCCGCTCTAGATCTCGCCGCCGACAACGCCAGATGCAACAGGCCACACTTGATCAACAGAAAAATCAGATGGTGATGATGCAACCTCAGCAATCTGTTAATAATGGTGCAAGTGCAATTCCTTGTGATGTTGTTCAAACCAACCCAACCATGGTTTTTGGTGATGCTTCTGGTTCATCCTCTTCATCATGTGGTGGTGTTCTTGGTGGTCAACAAGGCATGGATGGTTTCTTCTCGGTTTCTTCTCAAATGGGTTTCCTTGGAGCTGATCAAAGTTTAGCTGCTTCATCAATTTTCAATCCTCCTCTTTCTCCCACTTTGAATTATCACTCTGGATATGGAGGTGCTAGTGCAGTTACAGGATTGATAACAGTGTTTATCAATGGAATAGCAACAGAAGTTCAAGCGGGGCCTATAGACATGAAAACAGTATTTGGAGAAAATGTCATGTTAGTTCATTCCTCTGGTGTGCTAGTTCCTACAAATGAACATGGTATTTTGATTCAGAATTTGCACCATGGTGAAAGCTACTTTCTGGTATCAAAGTCAAGACAAGTATGA 798 0.4286 MEDKMQPDPPNNTPNQHVSEKNEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQRQMQQATLDQQKNQMVMMQPQQSVNNGASAIPCDVVQTNPTMVFGDASGSSSSSCGGVLGGQQGMDGFFSVSSQMGFLGADQSLAASSIFNPPLSPTLNYHSGYGGASAVTGLITVFINGIATEVQAGPIDMKTVFGENVMLVHSSGVLVPTNEHGILIQNLHHGESYFLVSKSRQV* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2001 265 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Psa3g2001 265 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 262 IPR044558 GO:0003700|GO:0048830
Psa3g2001 265 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 262 - -
Psa3g2001 265 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Psa3g2001 265 Gene3D - 26 94 - -
Psa3g2001 265 SMART HOX_1 24 91 IPR001356 GO:0003677
Psa3g2001 265 MobiDBLite consensus disorder prediction 1 29 - -
Psa3g2001 265 SUPERFAMILY Homeodomain-like 21 93 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2001 Psa-Chr3 178442409 178445050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2001 19 265 Wox Gene Family AT3G03660 48.289 1.37e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa3g2001 Homeodomain 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2001 - - lang:109335690 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2001 3 178442409 178445050 Psa3g2001 3 178442409 178445050 ECH