Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1999 ATGAGTCTTTTTCCTTTAACAACCCCTGAAATGGGTCTTGAGATTTTCAGACCATCATCAATGTTTCACTCCAAAGAAGAAGATGTGTACTTAGGGGTTCAGAGAAAAAACCTGTCTTTGAAACTTGGTGATGGTGTAGAACAAAAAACCTCTCTTTCTGTGAAAACTGGTTACTCCAAGCTTTGTTCTAGAGGCCATTGGAGACCAGGTGAAGATGCAAAACTCAAAGAGCTTGTTGCTGAATATGGACCTCAAAATTGGAACTTGATTGCAGAACATCTTCAAGGAAGATCAGGGAAAAGCTGCAGATTAAGGTGGTTCAATCAGCTAGATCCAAGGATCAACAGAAGCACTTTTTCTGAGGAGGAAGAGGAGAGGCTTTTAGCTTCTCATAAAATGTATGGTAACAAATGGGCTATGATTGCTAGACTTTTTCCTGGAAGAACAGATAATGCAGTGAAGAATCATTGGCATGTAATCATGGCTAGGAGGCATAGGGAACAGTGTAGTGTGTATAGAAGGAGAAAGCCAGTTGTTGAAAGTCTTTCTAAGGGTTTGAAATTGAGTCTTTCAAACAATGCAGTTAGTGATTCAACTATGTCAAGTACAATAGATGGGAATGCCTCAACTTGTACTAATCTCTCACTCACTCCCTCTTCAGTTAAACTAAGTCCTCAACTGTTTGATAACCTAGTGGCTAATGTTCAAAGTCACCAAGGCTATGGATCAATATTAGGTAAATCTAGAGAAAGTGGTGTGGAAACAAGTTTTGACAAGTATTTTGGAGGTGTTAAGAAGCATGAAAAGGTGGAAAAGCTCAAAGTAATGGATGTGGTCCAGTCCAATTATTCAGATTCAAACTCATCAGAAGTATCAGTATCTGAGTCAGTTGGCACCAACAACCATAGGTCCAATATCTCAATTTCTGGTGAAAGTGTAAATGTTGGTATTAACATGCTAGTACCACCATTCATTGATTTTCTTGGAGTAGGAGCTAGCTAA 1002 0.3902 MSLFPLTTPEMGLEIFRPSSMFHSKEEDVYLGVQRKNLSLKLGDGVEQKTSLSVKTGYSKLCSRGHWRPGEDAKLKELVAEYGPQNWNLIAEHLQGRSGKSCRLRWFNQLDPRINRSTFSEEEEERLLASHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREQCSVYRRRKPVVESLSKGLKLSLSNNAVSDSTMSSTIDGNASTCTNLSLTPSSVKLSPQLFDNLVANVQSHQGYGSILGKSRESGVETSFDKYFGGVKKHEKVEKLKVMDVVQSNYSDSNSSEVSVSESVGTNNHRSNISISGESVNVGINMLVPPFIDFLGVGAS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1999 333 Gene3D - 118 181 - -
Psa3g1999 333 Gene3D - 64 115 - -
Psa3g1999 333 PANTHER MYB PROTEIN-RELATED 43 332 - -
Psa3g1999 333 ProSiteProfiles Myb-like domain profile. 64 110 IPR001005 -
Psa3g1999 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 165 IPR017930 -
Psa3g1999 333 PANTHER OS08G0435700 PROTEIN 43 332 - -
Psa3g1999 333 CDD SANT 118 158 IPR001005 -
Psa3g1999 333 CDD SANT 67 108 IPR001005 -
Psa3g1999 333 SUPERFAMILY Homeodomain-like 64 157 IPR009057 -
Psa3g1999 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 110 IPR017930 -
Psa3g1999 333 SMART sant 115 163 IPR001005 -
Psa3g1999 333 SMART sant 63 112 IPR001005 -
Psa3g1999 333 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Psa3g1999 333 Pfam Myb-like DNA-binding domain 64 110 IPR001005 -
Psa3g1999 333 Pfam Myb-like DNA-binding domain 116 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1999 Psa-Chr3 178198068 178200919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1999 59 333 MYB Transcription Factor Family AT5G17800 43.617 2.33e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g1999 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1999 K09422 - gmx:100791795 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1999 3 178198068 178200919 Psa3g1999 3 178198068 178200919 ECH