Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1990 ATGAGTTTAAGAATAAAGGCCTTCTTTTCTTCAAAGTCATGGAGAGTATATAAACCAATCACATGCATTGATACTATTTCAAACCTTTCTCTCTCTCTCTCTCTCAATTTTAGTCTTAAGAGTGATCCAATAGTAGTGAAGAGTTTTGAGGGTGAAAAAAAGAAAGAATCCATGGGAAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCCGTTCCTACTAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACAAATTATCTAAGGCCAGGAATCAAGAGAGGAAACTTCACTCCTCATGAAGAAGGAATGATTATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATTTAAAGAAAAAGCTTAACAAATTTCAAGCTGCTGCTTTAGAGTCATCAAACTCAACAACTTATGTATCAAAAAGTTTTAGTGACAGAAGCTTAGATATTACCAACAATCATGCTTCGTCGCTAAAGCTTAATAGTAATAATCAAAATTCTCATCAATCTTCTTCATCAACATATGCTTCAAGCACTGAGAATATTTCAAGGCTCTTAGAAGGTTGGATGAGATCTTCACCAAACTCACAACAACAACAACAGATCAAAGGAAATTACCAATATGGTCATCATCAAGAGTTTCAAAGCAATGGTGATGATAATGTTATTATTGATGATGATAATAATAGCTTTGAAAATAATGGTAATTTGTTAGTGAAGTCTGCTTCAGTTCCAGCTGATTTAAACCTTCAAGGCCATCATCATCATCATCATCATCACCAGCAGCAGCAGCAGAAAACTAGCAAAGATGAAATGGTTTCTCATGATCAAGAGTTTGATTCTATTCTTTCATTTGAGAATCTTAACAACGGTGTTGCTTGGGACAAGTCAACTTGTGATTCTATGCCTGCTGAAAAGTGTTCTTCTTCTTCTCAGAAGAGTATCAAGAATTTATGCAATGCTCCTCCTCCATTGTCATTTCTTGAGAAGTGGTTATTGGATGAAAATGTTGGTCATGTGGAGGAAATGATGGAATTATCATCACCAATGTTCTAA 1209 0.3623 MSLRIKAFFSSKSWRVYKPITCIDTISNLSLSLSLNFSLKSDPIVVKSFEGEKKKESMGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFQAAALESSNSTTYVSKSFSDRSLDITNNHASSLKLNSNNQNSHQSSSSTYASSTENISRLLEGWMRSSPNSQQQQQIKGNYQYGHHQEFQSNGDDNVIIDDDNNSFENNGNLLVKSASVPADLNLQGHHHHHHHHQQQQQKTSKDEMVSHDQEFDSILSFENLNNGVAWDKSTCDSMPAEKCSSSSQKSIKNLCNAPPPLSFLEKWLLDENVGHVEEMMELSSPMF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1990 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 173 IPR017930 -
Psa3g1990 402 Gene3D - 70 123 - -
Psa3g1990 402 MobiDBLite consensus disorder prediction 303 322 - -
Psa3g1990 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 58 393 - -
Psa3g1990 402 PANTHER TRANSCRIPTION FACTOR MYB60 58 393 - -
Psa3g1990 402 ProSiteProfiles Myb-like domain profile. 66 118 IPR001005 -
Psa3g1990 402 Gene3D - 125 232 - -
Psa3g1990 402 Pfam Myb-like DNA-binding domain 71 118 IPR001005 -
Psa3g1990 402 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Psa3g1990 402 CDD SANT 73 118 IPR001005 -
Psa3g1990 402 CDD SANT 126 169 IPR001005 -
Psa3g1990 402 ProSiteProfiles Myb-like domain profile. 119 169 IPR001005 -
Psa3g1990 402 SMART sant 70 120 IPR001005 -
Psa3g1990 402 SMART sant 123 171 IPR001005 -
Psa3g1990 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 122 IPR017930 -
Psa3g1990 402 SUPERFAMILY Homeodomain-like 68 165 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1990 Psa-Chr3 176643766 176645741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1990 58 188 MYB Transcription Factor Family AT5G62470 81.679 4.46e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g1990 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1990 K09422 - gmx:100802204 397.512