Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1988 ATGCATCAAGGGAAGCCTGAAAAGGGTAGAAAGTTGCTTGAGTTGGTTCCGGATAAGTTGGACACCGCTTGTTGGAATGCGATGATTGTAGGTTATGCAAAGAAGGAATGGGAAAATGAGTTTGGCAATGCGGTTTTTCGAGAGGATGGTGGAGAGGAATGTTGTTTCCTGGAATTCTCTTACTACAGTGCATGTGTTAATCTTGCTGCTTTGCAACCTGAAAAGGCTAGAAAGTTGCTTGAGTTGGTTCCGGATAAGTTGGACACCGCTTGTTGGAATGCGATGATTGTAGGTTATGCAAAGAAGGAATGGGAAAATGAGTTTGGCAATGCGGTTTTTCGAGAGGATGGTGGAGAGGAATGTTGTTTCCTGGAATTCTCTTACTACAGTGCATGTGTTAATCTTGCTGCTTTGCAACCAACTCCATATGCCAATAAAGGTCCTATGGGGAGAAACGATGCTCTTCCAAGAATAATTCCAATATCTGCATTGAATCCATATCAAAATATGTGGAACTTGGTTGGCTTGATTGAAGACAGTGATGAAAATGAAACCGTGTTGCCCCTCTCATCTCGCTTGGAATCGAAAAGTCCTGTCAATATTGAAGTTAGGAATTCTAGTTCAAGTAAAAGAAGCAAGAAAAAGTCTAGTAACACTTCTGATGAGGTTGAATTTAAATCAAAAGTTCCAAGAACTAAATCTGACACATCTCATGACTTGGCGTCAAATTTGAGTGGCCATGAACACAGAAGAAAAGTTGCATCAGTTGAAAAATCAATAGCTGATACCTCTAAGTGCAAGACTGTGCCTTCCTTGAGTAATTCAAATATAGATATTCTAGCGGATGATATGGAAGAATCTCATTTGTCCAGGTACAAAGAAGCACGTAGATCATCATCTAATTCTCGTGATAGACTATTCTCAACTACTAAAGGAGATTCAGTTTCACATTCCATGCCTACAAAAACTGACAATTATCACTCATTGCCTTCAAAAGTCAATGCTGCTCCTAATCTTCCACAAAATTTGAAACTACATAGTCATCAGCCTCAGCATTTGGTCAATGACGATGGATTTAATCGGTCTCAGTTGTCTTCCAATCTAGAAAACCAAGTGAAGGTGGAGCCTAGAATTGAACACCATAAAGAAGTGCTCAATTCTCATGTTCCTGAACAGTTCCATATGTCTGAGATGCAGAATCAGCTCCAACAAAATTCATCTGAAGATTGTCCTAGGAGTGCTCAACACCTTTCATTTCCATCTG 1264 0.3995 MHQGKPEKGRKLLELVPDKLDTACWNAMIVGYAKKEWENEFGNAVFREDGGEECCFLEFSYYSACVNLAALQPEKARKLLELVPDKLDTACWNAMIVGYAKKEWENEFGNAVFREDGGEECCFLEFSYYSACVNLAALQPTPYANKGPMGRNDALPRIIPISALNPYQNMWNLVGLIEDSDENETVLPLSSRLESKSPVNIEVRNSSSSKRSKKKSSNTSDEVEFKSKVPRTKSDTSHDLASNLSGHEHRRKVASVEKSIADTSKCKTVPSLSNSNIDILADDMEESHLSRYKEARRSSSNSRDRLFSTTKGDSVSHSMPTKTDNYHSLPSKVNAAPNLPQNLKLHSHQPQHLVNDDGFNRSQLSSNLENQVKVEPRIEHHKEVLNSHVPEQFHMSEMQNQLQQNSSEDCPRSAQHLSFPS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1988 421 MobiDBLite consensus disorder prediction 290 320 - -
Psa3g1988 421 MobiDBLite consensus disorder prediction 302 320 - -
Psa3g1988 421 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Psa3g1988 421 PANTHER OS07G0578800 PROTEIN-RELATED 71 105 IPR045215 GO:0003723|GO:0009451
Psa3g1988 421 PANTHER OS07G0578800 PROTEIN-RELATED 6 37 IPR045215 GO:0003723|GO:0009451
Psa3g1988 421 MobiDBLite consensus disorder prediction 242 258 - -
Psa3g1988 421 MobiDBLite consensus disorder prediction 398 421 - -
Psa3g1988 421 MobiDBLite consensus disorder prediction 198 267 - -
Psa3g1988 421 MobiDBLite consensus disorder prediction 214 235 - -
Psa3g1988 421 PANTHER OS12G0289800 PROTEIN 71 105 - -
Psa3g1988 421 PANTHER OS12G0289800 PROTEIN 6 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1988 Psa-Chr3 176439413 176442528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1988 139 173 Core DNA Replication Machinery Family AT5G45400 60.000 5.40e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1988 - - gmx:100792437 174.481