Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1944 ATGTTTCATGCAAAGAAGTTTCCGGAGGCAACTATGATGCCTCATAAATCTCAAGGTGGAGGTGAACAACTTGTGGATGTTGGGGTTTTGAGTGGATCTGTTGTGAAAGATGCTGCACCTGCTGGGGGAGGGGGGAAGCAACGTTTGCGCTGGACGTCCGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGGGCAACGCCAAAAGGTGTTCTTAGAGTGATGGGGGTGCCTGGTCTGACCATTTATCATGTTAAAAGCCATTTACAGAAGTATCGCCTGGCGAAGTACTTGCCCGAATCACCAGCTGATGGTAAAGATTCTAAGGATGAGAAAAGGAATTCTGTAGACAGCATTTCTGGCGCTGATTCTTCCCCGGGATTGCAAATCAACGACGCACTACGGATGCAGATGGAGGTTCAAAAACGTTTGCATGAACAGCTTGAGGTTCAAAAGCAATTGCAGATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAACAGAAATTAGGTAGTACTTTGGCAGCGTCCGAAACACTTCCATTACCCCATGATAAGCAAACTCATTCCGTATCGGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGCACTTTTTCTCCACATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGTTTCATTGCATCCCAAGTTACAAGAAAGACGACACAGAAGAATGATTGTAACGTTGGCTGTTTGGATCCTAACTTGTATGAAGATGATGCTGGTTTTGGATTTGATTTGGAGACAGAAAATGATGACGACAATGAGAGTGAGCAGTAA 840 0.4464 MFHAKKFPEATMMPHKSQGGGEQLVDVGVLSGSVVKDAAPAGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSVDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLPHDKQTHSVSEPSGSSDALAGTFSPHKKQRIDEGSKDGFIASQVTRKTTQKNDCNVGCLDPNLYEDDAGFGFDLETENDDDNESEQ* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1944 279 MobiDBLite consensus disorder prediction 106 123 - -
Psa3g1944 279 MobiDBLite consensus disorder prediction 1 20 - -
Psa3g1944 279 PANTHER OS05G0491500 PROTEIN 2 273 - -
Psa3g1944 279 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Psa3g1944 279 MobiDBLite consensus disorder prediction 194 215 - -
Psa3g1944 279 Pfam MYB-CC type transfactor, LHEQLE motif 134 180 IPR025756 -
Psa3g1944 279 MobiDBLite consensus disorder prediction 192 231 - -
Psa3g1944 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 273 IPR044848 GO:0003700
Psa3g1944 279 Gene3D - 45 104 - -
Psa3g1944 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 103 IPR017930 -
Psa3g1944 279 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Psa3g1944 279 SUPERFAMILY Homeodomain-like 46 100 IPR009057 -
Psa3g1944 279 MobiDBLite consensus disorder prediction 106 135 - -
Psa3g1944 279 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1944 Psa-Chr3 174434004 174439906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1944 28 196 G2-like Transcription Factor Family AT3G13040 50.575 5.51e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa3g1944 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1944 - - gmx:100783132 441.81