Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa3g1941 | TTTGGTGGTCCCTCTACTAGTGGATCAACATCTGGTGATGGATCTAATGCTGTTGGAAACAGAAATGAACCAGTTGCTGTCGGTTTGTCGATCTTTGCTGCAAAAGCATGGAAGGTTATCACAGAAGAGCGCGGCATAGCTCTCAACAAAGTCACGCCAGAACTCCGCGAGAAACTACACAAGACCAGACTCCACATTGGACAATTGGTGAAGGATACGTCGGATAAACTTAAACAAGCTAGTGAAATTGATCATCATGTTGATGTTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCCAAAGATTTTCAGGCAGTGTTGAAAGAATTGATCCAAAAGGCGTGTCTTCTTCTTTATAATGAGATTTCCTTCAATGAGGCTATCATCGAGGAAAGAGAACAAGGTATTCAAGAAGTCCAGCAGCAGATTGGGGAAGTAAATGAGATCTTCAAAGATCTTGCCGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGATCCAACATTGAGCATTCCCATGAAGCCACTGCCCAAGCAAAATCAGAACTTGTGAAAGCTTCTAAGACACAACGATCAACTGCAAATGCTGGTTTTGATGGTTCTTTAATTTACAGCAAATTGTTGGAACAAGATAATCTTAATTTGGGTTTCGATGCTGCTAAAGGAACTTATGTTGATATGGTGAAGGCTGGGATTATAGATCCTGTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTATCGTTGTTACTGACGACAACCGAGGCATCTATTGTAGAAAATATGAGTGATAAAAACAAACCTCCTCAAAGGGTGGCAGATATGGATGATTTGGACTACTAA | 858 | 0.4079 | FGGPSTSGSTSGDGSNAVGNRNEPVAVGLSIFAAKAWKVITEERGIALNKVTPELREKLHKTRLHIGQLVKDTSDKLKQASEIDHHVDVNATKKIADAKLAKDFQAVLKELIQKACLLLYNEISFNEAIIEEREQGIQEVQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATAQAKSELVKASKTQRSTANAGFDGSLIYSKLLEQDNLNLGFDAAKGTYVDMVKAGIIDPVKVVRTALVDAASVSLLLTTTEASIVENMSDKNKPPQRVADMDDLDY* | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa3g1941 | 285 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 127 | 189 | IPR000727 | - | |
| Psa3g1941 | 285 | CDD | SNARE_Qa | 130 | 188 | - | - | |
| Psa3g1941 | 285 | Gene3D | - | 44 | 115 | - | - | |
| Psa3g1941 | 285 | PANTHER | SYNTAXIN | 115 | 207 | IPR045242 | - | |
| Psa3g1941 | 285 | PANTHER | SYNTAXIN | 47 | 115 | IPR045242 | - | |
| Psa3g1941 | 285 | SUPERFAMILY | t-snare proteins | 52 | 182 | IPR010989 | GO:0016020|GO:0016192 | |
| Psa3g1941 | 285 | Pfam | TCP-1/cpn60 chaperonin family | 197 | 261 | IPR002423 | GO:0005524 | |
| Psa3g1941 | 285 | MobiDBLite | consensus disorder prediction | 266 | 285 | - | - | |
| Psa3g1941 | 285 | SMART | tSNARE_6 | 122 | 189 | IPR000727 | - | |
| Psa3g1941 | 285 | SUPERFAMILY | GroEL equatorial domain-like | 197 | 265 | IPR027413 | - | |
| Psa3g1941 | 285 | Pfam | Syntaxin-like protein | 50 | 111 | IPR006011 | GO:0016020 | |
| Psa3g1941 | 285 | Gene3D | - | 131 | 199 | - | - | |
| Psa3g1941 | 285 | Pfam | SNARE domain | 164 | 196 | IPR000727 | - | |
| Psa3g1941 | 285 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 115 | 207 | - | - | |
| Psa3g1941 | 285 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 47 | 115 | - | - | |
| Psa3g1941 | 285 | ProSitePatterns | Syntaxin / epimorphin family signature. | 133 | 172 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa3g1941 | Psa-Chr3 | 174379812 | 174383019 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa3g1941 | 50 | 198 | SNARE and Associated Proteins | AT5G46860 | 57.436 | 3.56e-64 | 201 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa3g1941 | - | K08488 | sind:105165147 | 196.052 |