Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1939 ATGGTGAGAAAGAGAAAGCTCGTCGCTAAATCGTCTCAACCAGAGGAACCACCGCTCAAACAGCACCACTCTCAGCCTCAACCGGATCCCGAACCGGAACCCTATATCCCCGCCGAAGAAGTTGAGGAAGAATATGAAGAAGTTGAGGAGGAATATGAAGAGGTTGAGGAAGTAGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGACGACGGAGGAGAACAAGCTCAAGGTGGAGAATACCTAGAAGAAGACGATGAACCGATTAAGGACCTCGTGGAGCCTTTCACCAAAGAGCAGATCGTGAATCTCCTTTGCGAGGCGGCGTCTAAACATCGTGATGTTGCGGACCGGATCCGTAAGATTGCTGACGGAGACGCGTCACACCGGAAGATTTTTGTTCATGGTTTGGGATGGGACACCACTTCCGCAACCCTAATTAACGCTTTTTCGCAATACGGTGAAATTGAGGATTGTAAAGCTGTTACTGATAAGGTTTCTGGGAAATCTAAGGGTTATGGGTTTATTCTTTTCAAGAAGCGGAGTGGGGCGAGGAATGCTTTGAAAGAGCCTCAGAAGAAGATTGGGAACAGGATGACGGCGTGCCAGCTGGCGTCTATTGGTCCTGTGCAGCAAACTCCGCAGCCAACGGCGCAGTTGGCGCCGCAAGGCTCGGAGTATACGCAGAGGAAGATATATATCAGCAATGTTGGTCCTGAATTGGATCCGCAGAAACTGTTTGCTTATTTCTCGAGGTTTGGAGAAATTGAGGAAGGGCCGTTAGGGCTTGACAAGGCGACGGGAAAGCCGAAAGGGTTTTGCTTGTTTGTTTATAAGAGTGCTGAGAGTGCAAGGAGGGCATTGGAGGAGCCTCATAAGGAATTTGAGGGACATATTTTGCATTGCCAGAGGGCAATTGATGGTCCTAAGGCGAAGACACAACATCAACAACCACAGCAGCAACAACACGTGAATTCATTGAATCAATTGAACCAACTGAACCCATTGACTCAGAGGACACAATTTCAGAGAAATGACAATATTGGATATGCCGGTGGTAGTAGTGTTGCAGTTAGCCAACCAGGGCACTTAATGGCGCCGGCAGGACCAACAATTGGGTACAACCAGGCTACTGCTTCTGCTGCACAGGGGCTGAATCCGGTGCTGACGCCTGCACTTGGACAGGCTTTGACGGCGCTACTTGCATCTCAGGGTGCTACTTTGGGGCTGAGTGATTTGTTGGGGAGTCTTGGAACGAGTAATGCTCTTAATCATGGAGGTGTTTCTGCTGCAGGTCATGGAGTTCAGAGTGGATACAGTGCTCAGCCTAGTATAAGTCCATCAGTTATGGGAGCATATGGGAATTCAGTACCACAGGTTGGGTTGCAGGTGCAATATCCAAACCAGCAGATTGGACAGGGTGGTTCCGGAAGAGGCCAATATGGTGGTGCTGCACCTTACATGGGGCACTAA 1479 0.497 MVRKRKLVAKSSQPEEPPLKQHHSQPQPDPEPEPYIPAEEVEEEYEEVEEEYEEVEEVEEEEEEEEEEEEEDDGGEQAQGGEYLEEDDEPIKDLVEPFTKEQIVNLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKKRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPTAQLAPQGSEYTQRKIYISNVGPELDPQKLFAYFSRFGEIEEGPLGLDKATGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDGPKAKTQHQQPQQQQHVNSLNQLNQLNPLTQRTQFQRNDNIGYAGGSSVAVSQPGHLMAPAGPTIGYNQATASAAQGLNPVLTPALGQALTALLASQGATLGLSDLLGSLGTSNALNHGGVSAAGHGVQSGYSAQPSISPSVMGAYGNSVPQVGLQVQYPNQQIGQGGSGRGQYGGAAPYMGH* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1939 492 SUPERFAMILY RNA-binding domain, RBD 217 325 IPR035979 GO:0003676
Psa3g1939 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 241 IPR000504 GO:0003723
Psa3g1939 492 MobiDBLite consensus disorder prediction 35 83 - -
Psa3g1939 492 PANTHER - 27 492 - -
Psa3g1939 492 MobiDBLite consensus disorder prediction 1 83 - -
Psa3g1939 492 CDD RRM_RBM24_RBM38_like 232 307 - -
Psa3g1939 492 PANTHER GEO13361P1-RELATED 27 492 - -
Psa3g1939 492 CDD RRM_RBM24_RBM38_like 132 207 - -
Psa3g1939 492 SMART rrm1_1 133 205 IPR000504 GO:0003723
Psa3g1939 492 SMART rrm1_1 233 305 IPR000504 GO:0003723
Psa3g1939 492 Gene3D - 214 327 IPR012677 -
Psa3g1939 492 Gene3D - 37 213 IPR012677 -
Psa3g1939 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 320 IPR000504 GO:0003723
Psa3g1939 492 SUPERFAMILY RNA-binding domain, RBD 130 214 IPR035979 GO:0003676
Psa3g1939 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 302 IPR000504 GO:0003723
Psa3g1939 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 200 IPR000504 GO:0003723
Psa3g1939 492 Coils Coil 38 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1939 Psa-Chr3 174235293 174242474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1939 219 311 C2H2 Transcription Factor Family AT2G19380 32.258 4.96e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1939 K12741 - gmx:100784200 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1939 3 174235293 174242474 Psa3g1939 3 174235293 174242474 ECH