Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1931 ATGGCACACCACAAACCGCAGCCATCACCGTTAACCGGAGAAGCAAACATGGTAGGTTTCAACTCTCAGTCGTCCTACGGTATGCAATCCATGCTCAAAGAAGGTCACAAGCATCTCTCCGATCTCGACGAAGCCGTTCTCAAAAACACTGATGCCTGTAACCAACTCTCCATCATCACTCGCACTTCCCTTGGCCCCAACGAGATGAATGAGATGGTTATAAATCATTTGGATAAACTTTTTGTGACGAATGATGCTGCTACGATTGTGAATGAACTTGAAGTTCAACATCCTGCTGCTAAGATTTTGGTGTTGGCTAGTAAGGGATCTGGACCAGATAATATGCAAGCTATACAAGTTGAACCTGTTGCTTCTTCCTTGAATTCCTCTTATTGCTACATACTTCATAATGGGCTTGCTGTCTTTACTTGGTCTGGAAGCAATACAAGTGCAAAAGATCAGGAACTTGTAGAGAGGATGCTGGATTTGATAAAGCCAAATTTACAATCAAAACCACAAAGGGAAGGTACAGAATCTGAACAGTTTTCGGATTTGTTGGGAGGAAAATCAGAATATCCCAGTCAAGAGATTAGTAAGGAGGCTGAAAATATATTTTTCTGGGTTGGTCAGGAGGTTGACACCTTAGTTCAGCAGTGCAAAAGTGATGAGGAAATTGTTGTTGTTTTCCAAACCAACCCTTATGCCCACCTAACTCCCGGTCAATTGTTTGAAATCCCTCCTTTGTTTCAAAACTCACTGCCCGAGGCTAAGTCCATGGTCCATCAGATGACAGATCATAGTAGCCAGAATAATGTTCAGTTCTCTCATCCATCCAAACAACCAAAGCTTCAACATCAACGACAGCAAACTCAACCTGGCTTGCTTTCTAAAACATTCTATCATGTTAGACTTCCTTCCACTACTACAAATAATCAGTTGTCTGCTTCTGGTTGTAGTATACGTACTGTGGCAATGGGAATTGCGCCATCTATCATTACTGGTGATGTTCCATCTTGCTCTACTTCACTTTCCACAAATAACTGTGCCCGTGCGCTTCCTCTAGCGGCATCATCCCATACCCTTATGAGCACAATAGGGAATGCCATGACTCAGTCTGCTGTGAAAATCTTGAGTCAAAGTTCTAATGCAAATTTGGTAAAACATGTACAGCCAAATTATCAAGTTAAGCCTGGTTTAAACATTTCCGAAAATCACAACCAAGGAAATTTTTACCCTCAGACATGCTTGAATGGTGGTGTTGTCCAGACAGATTGCTTGGATACGTCGTCTTCTACGACTTCAGTTGATGCTAGGTGCAATGTTTCATACGGCAACAACATGAACGGGCAAATGAGAGTGCCACTAAAGCTAGATTCTAATCTTTTGGTGCCGCCATTTAGTGTTGTTTCACTTATAGTTGGACCCACTTTGTTCATATGGTTTTGTTCTCTTGCGGGTATTGGGATGTACAATCTTGTCAAATATGACAGAAGTGTCTTGAGGGCATTTAATCCTATTCATATCTACTATTTCTTCAAGTGGAACACAGCTAAGGCATGGTATTCTCTTGGGGGCTGTCTTCCGTGTGCAACTGGTTCTGAAGCCATGTTTGCAGACCTTTGCTACTTTTCTGTACGATCAGTGCAGCTCACATTTATCTTTCTTGTTTTGCCGTGCCTGCTACTGGGTTATCTGGGACAAGCTGCATACCTTATGGAAAACCATGCTGATGCTGGTCAGGCCTTTTATTCTTCTGTTCCGAGTGGTGCATTCTGGCCAACTTTCCTTATTGCTACCATTGCAGCACTTATTGCAAGTCGGGCTATGACAACAGCAACAATTTCAAAGTGTTCCCGTGCAAGCTGGTTAAACACCGCCGCTGTTGCAGTATTTTGGAACACTTTTTATGAGGGTTCTGTTGAATGCTTAAATTTTGATAAACTTCTTAGTACTTTACATCCATTGGGGGCTTCAAGTTATCATTCTCCGTGTCCAGAAAATCTGCAAGAAACATCATTATCAAACTTAACTTTACAAGAGGAGCAAACAAAAAGTGCTCAAATGCCAAAAAATGCCAAAGTGGACTTGGAGGTGGACGAATCTGATACCTTTTCTGTGCTAGCTGGCTATTTTAGAAAGTCGTGTACTGAGCCGTCTAGTAGGTTTCTCCAAGAAAGTCTGAGGTCATACTATGTTGGTTGTGAGGCTAAACCAGAAGGCAGCTTATGGGCATACAAATACAAGCCAACTAAAGCCGTTGAAGTATGTGGTAATGACGAAGCCGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTACAAACCCAGGAAGAAGACATGTCAGAGGGATACAAGGGTCATGCAAGATGATGATGATTATATGTGTTCTGACAGTGACTATGATTCAGAAGATATGAATGAAGAGGATTCACTGCAGAATGTTCTTTTAATTACAGGACCAATAGGGAGTGGCAAGTCCGCAGCAGTCTATGCTTGTGCCCAAGAGCAAGGCTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGAGACTGTTGTAAAGCAGTATTTTGGAGATGCCCTTGGTTCACATGGGTTCAAAAGGTTATCAGAACATACTTTGAGTTCACAGAAGATAACTACAAACTTCCCCCCAGCTTCTGCTTTGATTAATGATAAAGCTGCGGATGAGGTGAATGACAGAGTAGTTGAACCAATACCGTTATCTGATGATGAAGCTCATAGCCCATTTAAAACATCCCAAAAGTTACTTGGCAAGAATGATGCTGTTGCATGTGATAAAGTCCAAACTTTGATTCTGGTTGAGGATGTGGACATACTCTTTCCTGAAGATCGTGGATGTATTGTCGCCATACAACAGATTGCCGAGACAACAAGGGGTCCAATTATATTGACCAGCAATAGTGACAATCCAGCCTATAGATACCGTTTCTTAGAACCAAATTCTCAGTTGTTGACAAGGCCGGTCTTAGACACTCATAGTCGGGACCACGATTGTGGTTACGATGGTGTTAACATCGAAAACAGCATGGCCATTATCAACAAGTTCCCGGCAGTAGTTACTGTTCAAGTAACAAAAGACAAGCAAGATTTCAGCATTCACTTGGGTTCATCAGTTGCTGCTAAACATGGGGAAAATGGTTCAACCATGGCAGGCTTTGACATTCAGGACATTGGAAAGCAGCCGACATGCATTGTTAGAGGTGAGACCAAGTTCAAGAATTCTAAAAGAAATAAAACTGTTGCTGGAGTGTTTGTGACATTTTTGGGAGAAAATGTTTCAACCGGTGTGAAGCTTGAAGATCAAATAGCACTGGGGAAACGATTGGTATTAGTGGGGAGCACAGGGACCGTGCGGTCTCAAAATGATTCTGCTTATGGTGCCAATGTCGAAGTGAGGCTCAGAGAGGCAGATTTTCTAGTTGGTCAGAATCAGTCTTCTTTGAGTCTTTCTCTGGTGCAGTGGAGAGGTGATTTAGCCTTGGGAGCCAATTTTCAGTCACAAATTTCTCTTGGACGAAGCTATAAGATGGCGGTTCTTGCTGGATTGAACAACAAGCTTAGCGGGCAGATCAATGTGAGGACAAGTAGTTCTGACCAACTTCAAATTTCCCTTATTGTTATTCTTCCAGTTGCCAAGGCTATCTACAAGAACTTTTGGACTGGTGTTACTGAAAACTATTCCATCTATTAA 3729 0.4216 MAHHKPQPSPLTGEANMVGFNSQSSYGMQSMLKEGHKHLSDLDEAVLKNTDACNQLSIITRTSLGPNEMNEMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLASKGSGPDNMQAIQVEPVASSLNSSYCYILHNGLAVFTWSGSNTSAKDQELVERMLDLIKPNLQSKPQREGTESEQFSDLLGGKSEYPSQEISKEAENIFFWVGQEVDTLVQQCKSDEEIVVVFQTNPYAHLTPGQLFEIPPLFQNSLPEAKSMVHQMTDHSSQNNVQFSHPSKQPKLQHQRQQTQPGLLSKTFYHVRLPSTTTNNQLSASGCSIRTVAMGIAPSIITGDVPSCSTSLSTNNCARALPLAASSHTLMSTIGNAMTQSAVKILSQSSNANLVKHVQPNYQVKPGLNISENHNQGNFYPQTCLNGGVVQTDCLDTSSSTTSVDARCNVSYGNNMNGQMRVPLKLDSNLLVPPFSVVSLIVGPTLFIWFCSLAGIGMYNLVKYDRSVLRAFNPIHIYYFFKWNTAKAWYSLGGCLPCATGSEAMFADLCYFSVRSVQLTFIFLVLPCLLLGYLGQAAYLMENHADAGQAFYSSVPSGAFWPTFLIATIAALIASRAMTTATISKCSRASWLNTAAVAVFWNTFYEGSVECLNFDKLLSTLHPLGASSYHSPCPENLQETSLSNLTLQEEQTKSAQMPKNAKVDLEVDESDTFSVLAGYFRKSCTEPSSRFLQESLRSYYVGCEAKPEGSLWAYKYKPTKAVEVCGNDEAVNFLSDWLHQWHERRYKPRKKTCQRDTRVMQDDDDYMCSDSDYDSEDMNEEDSLQNVLLITGPIGSGKSAAVYACAQEQGFDILELNASDCRNETVVKQYFGDALGSHGFKRLSEHTLSSQKITTNFPPASALINDKAADEVNDRVVEPIPLSDDEAHSPFKTSQKLLGKNDAVACDKVQTLILVEDVDILFPEDRGCIVAIQQIAETTRGPIILTSNSDNPAYRYRFLEPNSQLLTRPVLDTHSRDHDCGYDGVNIENSMAIINKFPAVVTVQVTKDKQDFSIHLGSSVAAKHGENGSTMAGFDIQDIGKQPTCIVRGETKFKNSKRNKTVAGVFVTFLGENVSTGVKLEDQIALGKRLVLVGSTGTVRSQNDSAYGANVEVRLREADFLVGQNQSSLSLSLVQWRGDLALGANFQSQISLGRSYKMAVLAGLNNKLSGQINVRTSSSDQLQISLIVILPVAKAIYKNFWTGVTENYSIY* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1931 1242 Pfam TCP-1/cpn60 chaperonin family 57 108 IPR002423 GO:0005524
Psa3g1931 1242 Pfam K+ potassium transporter 469 621 IPR003855 GO:0015079|GO:0016020|GO:0071805
Psa3g1931 1242 Gene3D - 740 990 IPR027417 -
Psa3g1931 1242 CDD AAA 819 880 - -
Psa3g1931 1242 Pfam Translocase of chloroplast 159/132, membrane anchor domain 979 1229 IPR024283 -
Psa3g1931 1242 Gene3D Severin 107 196 IPR029006 -
Psa3g1931 1242 Gene3D - 22 106 IPR027413 -
Psa3g1931 1242 PANTHER TRANSLOCASE OF CHLOROPLAST 159, CHLOROPLASTIC 977 1233 - -
Psa3g1931 1242 ProSitePatterns Chaperonins TCP-1 signature 2. 82 98 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Psa3g1931 1242 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 977 1233 IPR045058 -
Psa3g1931 1242 SMART VILL_6 100 189 IPR007122 GO:0051015
Psa3g1931 1242 MobiDBLite consensus disorder prediction 167 189 - -
Psa3g1931 1242 MobiDBLite consensus disorder prediction 170 184 - -
Psa3g1931 1242 Pfam ATPase family associated with various cellular activities (AAA) 819 857 IPR003959 GO:0005524|GO:0016887
Psa3g1931 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 989 IPR027417 -
Psa3g1931 1242 SUPERFAMILY GroEL equatorial domain-like 40 108 IPR027413 -
Psa3g1931 1242 SUPERFAMILY Actin depolymerizing proteins 100 195 - -
Psa3g1931 1242 CDD gelsolin_S5_like 108 191 - -
Psa3g1931 1242 PRINTS Gelsolin family signature 115 135 IPR007122 GO:0051015
Psa3g1931 1242 PRINTS Gelsolin family signature 175 194 IPR007122 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1931 Psa-Chr3 173813890 173818508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1931 467 621 Inorganic Solute Cotransporters AT5G09400 76.129 1.00e-72 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1931 - - lja:Lj1g3v0812930.1 460.299