Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1929 ATGGAACGACGAAGTAGGTTGCTTTTGTTATCAGATTTTGTTATTTCTTTCATGTGGGTATGTTCTGGTGTTGTCGTTCGGTTAATCGTCTTCAAAATTCTGGGTTTTTCTCATACCCATCTCGCCGAGATTCTGAAGCTTTCATTTTACATAGTCAACATGTTCTTGTTTGCTTTCCTTACCAAGGTTTCTCGTGGCGGGGCCTACAATCCTCTCACTGTTTTGGCTGCTGCTATCTCTGGGGATATTCGTGACTTCCTTTTCTGTGTTGGTTCTAGAATTCCTGCTCAGGTGTTTGGATCTATTGTTGGAGTTAAATTTCTTATATACACCATTCCCGAAGTAGGACAGGGTCCGCGTTTGAATGTTGACATCCATCAAGGAGCACTGACAGAAGGATTACTAACATTTGTAATCGTAAGCATTTCACTTGGGCTTGCCGCAACAAAAATCCAAGGAAATTTCTTCATGAAGACGTGGATTTCCAGTCTCTCCAAGTTAACACTTCAAATACTCGGTTCTGATCTCACCGGTGGTTGTATGAACCCCGCATCTGTGATGGGATGGGCTTATGCTCGAGGGGATCACATAACAAAGGAGCACTTCCTTGTTTACTGGCTTGCCCCTATAGAGGGAACTATTTTTGCAGTGTGGACATTCAAATGGCTTTTCCGGCCTGTTAACAAAGATAAAGCAGGCTCGAAAAGAAAATCAGATTGA 720 0.4264 MERRSRLLLLSDFVISFMWVCSGVVVRLIVFKILGFSHTHLAEILKLSFYIVNMFLFAFLTKVSRGGAYNPLTVLAAAISGDIRDFLFCVGSRIPAQVFGSIVGVKFLIYTIPEVGQGPRLNVDIHQGALTEGLLTFVIVSISLGLAATKIQGNFFMKTWISSLSKLTLQILGSDLTGGCMNPASVMGWAYARGDHITKEHFLVYWLAPIEGTIFAVWTFKWLFRPVNKDKAGSKRKSD* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1929 239 PRINTS Major intrinsic protein family signature 7 26 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g1929 239 PRINTS Major intrinsic protein family signature 50 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g1929 239 PRINTS Major intrinsic protein family signature 89 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g1929 239 PRINTS Major intrinsic protein family signature 131 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g1929 239 PRINTS Major intrinsic protein family signature 163 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g1929 239 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g1929 239 PANTHER AQUAPORIN SIP2-1-RELATED 6 239 IPR044226 GO:0015267
Psa3g1929 239 Pfam Major intrinsic protein 10 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa3g1929 239 Gene3D Glycerol uptake facilitator protein. 7 239 IPR023271 -
Psa3g1929 239 SUPERFAMILY Aquaporin-like 9 228 IPR023271 -
Psa3g1929 239 PANTHER AQUAPORIN SIP2-1-RELATED 6 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1929 Psa-Chr3 173720100 173723234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1929 8 239 Major Intrinsic Protein MIP AT3G56950 58.369 1.57e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1929 K09875 - gmx:100786138 357.066