Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1926 ATGGACAATAACGTGGGTCAAGATTCATTTGATAAGTCTAGGGTTTTAAATGTGAAGCCATTGAGGACTCTTGTTCCTGTGTTCCCTTCACCATCTAATCCTTCTTCGTCTTCAACTCCACAAGGTGGTGCTCCTTTTGTTTGTGCTTCTCCTGCTGGTCCTTTCCCCACTGGTGTTGCGCCCTTTTACCCTTTCTTTGTATCGCCCGAATCTCAGAGGCTTTCCGAACAGAATGCACCGACCCCGCAACGTGCTACACCGATATCTACTGCAGTTCCGATTAATTCATTCAAGACTCCAACTCGGCGACGAATGGGAGATGTTGGTTCGTCACGGAGGACTAGCCGGAATCGCGCTGCACATATCACAGAGGAAGAAGGCTACAACAATACTGAGATGAATGAACTTGATGTAGAAGATGGAACTGGGAATGGGATTCAAAGCGCAAGAAGAGGGAAGGGCAAAGCTGGCCAAGGTGGAGTTAATCGCGAGAAGGGAGCAAGTGATCAAAAACAAAAGGGCCCTGCATATTTCACTTATATTCCTACTCTCAAGAATTCGAAAGCAATTGGCTCCTGCGGAACCTGCTGCTGGATGTTCTTGTGTTTGGTGGATGTCAACCTGGAAATTACAACTGTTCCTGCATTTAAAGAATGGAGGTTACTTCCGTATTCTGTAGCTGGCTGCTCTCCAAATGTGTTGTGGCGTCCGATTGTACGCGAAAATAAGCATGAATCAGATCTCCACATTGCTTTCTTTGCAATTAGACACATCCCTCCTATGGTGGAGTTAACTTATGATTATGGGATAAACCTTCCTCTCAAAGCTGGTCAAAGGAAAAAGAAATGCTTATGTGGATCTGTGAAATGCAGGGGTTACTTTTGTTAA 888 0.4527 MDNNVGQDSFDKSRVLNVKPLRTLVPVFPSPSNPSSSSTPQGGAPFVCASPAGPFPTGVAPFYPFFVSPESQRLSEQNAPTPQRATPISTAVPINSFKTPTRRRMGDVGSSRRTSRNRAAHITEEEGYNNTEMNELDVEDGTGNGIQSARRGKGKAGQGGVNREKGASDQKQKGPAYFTYIPTLKNSKAIGSCGTCCWMFLCLVDVNLEITTVPAFKEWRLLPYSVAGCSPNVLWRPIVRENKHESDLHIAFFAIRHIPPMVELTYDYGINLPLKAGQRKKKCLCGSVKCRGYFC* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1926 295 MobiDBLite consensus disorder prediction 144 170 - -
Psa3g1926 295 Pfam SET domain 204 269 IPR001214 GO:0005515
Psa3g1926 295 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 228 294 - -
Psa3g1926 295 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 7 151 - -
Psa3g1926 295 ProSiteProfiles Post-SET domain profile. 279 295 IPR003616 -
Psa3g1926 295 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 7 151 - -
Psa3g1926 295 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 228 294 - -
Psa3g1926 295 Gene3D SET domain 215 294 IPR046341 -
Psa3g1926 295 SUPERFAMILY SET domain 229 292 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1926 Psa-Chr3 173456826 173458931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1926 229 294 Su(var)3-9 homologs AT1G73100 60.274 9.61e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa3g1926 SET 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1926 K24405 - gmx:100786650 192.2