Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1920 ATGGAGGAACGACAGCCCGAACAAGAACAACACTGCCAGGTCATCACTCTCGGAACTCATAACCCTCTCCTCCCCGGGCCCCAATCGGACGATGAAGACGACGGCGGATGCGCCTATTCAAGGGCTGTTCTCGTTGTCGACATGGTCTGGAACCTAGCCTTCGTGCTTGTCGCCGCCGCCGTCATCCTATCCACGTTCGCCGAGCGTCCCTCCACTCCTCTGAGACTTTGGCTGTGTGGCTACGCCTTGGAGTGCGTTCTCCATGTGGCTTTTGTTTACTCTGAATATCGTCGTGATTCCTTCTCTCACACTCCTTACAGCATTGCGAAGAAGTTAGAGCCTATGAACACACTGGCATCATCTGTTTGGTGGGTTTTTGGATTTTATTGGATTGTTGTTGGTGGCCAACCACTTCTTGAAGATTCTCCGCGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATCATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCTCTCTTCTGCATCATCCCAATAATAGCGTTAGCTTATGCGTTAAGAATCAGAGAAGGTGCTTCAGAAGATGATATCAGGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATGTAATGGTTATGGTTGATGACGACAACAACAAGCAACTTGTTAAAGCAAGAATCGGTTCATACAATCAAAGTCATATCAGTGAACTATCTCTTCATCCCGATGATTCTGAATGTTGTATCTGCCTAAGTACATACGTTGACGGAACAGAACTTTACCGCCTTCCCTGTACCCACCATTTTCACTGTGGGTGCATCAGCCGCTGGCTTCGGACAAAAGCAACTTGCCCGCTCTGCAAATTTAATATTCGAAGAGCCGACACATTGGTTTAA 900 0.4656 MEERQPEQEQHCQVITLGTHNPLLPGPQSDDEDDGGCAYSRAVLVVDMVWNLAFVLVAAAVILSTFAERPSTPLRLWLCGYALECVLHVAFVYSEYRRDSFSHTPYSIAKKLEPMNTLASSVWWVFGFYWIVVGGQPLLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYALRIREGASEDDIRSLPMYRFSQSNVMVMVDDDNNKQLVKARIGSYNQSHISELSLHPDDSECCICLSTYVDGTELYRLPCTHHFHCGCISRWLRTKATCPLCKFNIRRADTLV* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1920 299 ProSiteProfiles Zinc finger RING-type profile. 248 289 IPR001841 -
Psa3g1920 299 PANTHER RING-FINGER UBIQUITIN LIGASE 26 299 - -
Psa3g1920 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 297 IPR013083 -
Psa3g1920 299 CDD RING-H2_RNF111_like 247 291 - -
Psa3g1920 299 SUPERFAMILY RING/U-box 233 293 - -
Psa3g1920 299 SMART ring_2 248 288 IPR001841 -
Psa3g1920 299 Pfam Ring finger domain 247 289 IPR001841 -
Psa3g1920 299 PANTHER TARGET OF ERK KINASE MPK-1 26 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1920 Psa-Chr3 173155485 173159373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1920 28 296 C3H Transcription Factor Family AT1G68070 44.330 1.65e-85 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1920 - - gmx:100808066 465.692