Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1906 ATGACACTCTCTCACCAAATTGGAAATGAAGGTCTCACCAAACAGATTCTCACAAAAGGTGTCTCTTGGCAAACTCCATTCTCAGGAGATCAAGTTCAAGTTCATTTCAGAGGACAAATTGAAAATGGACCATCTCTTGAATCCAGTTATGATAAAGGCTCTTCTTTTCATTTCAAATTAGGCCAAGGTGAAGTAATCAAAGGTTGGGATGAAGGAGTTGCTACTATGAAAAAAGGGGAGAGAGCTATCTTCAAAATACCACCTGCCTTAGCGTACGGAGAAATCGGTTCTCCACCGTTGATTCCTCCGAATGCAACTCTCGTTTTTGAGATTGAAATGTTGTGTTGGAGTACCATCAGAGACTTGACCGGCGATGGAGGAATCATGAAAAAGACGATAATGGAAGGAGAAGGATGGGCTACTCCAAAAGAGCTTGATGAAGTCCTAGTGAAATATGAAGCAAAGCTTGAAAATGGGATGCTTATTAAGTCTGATAAAGGTGTGGATTTTAATACAAACGACGGATATCTATGTCCAGCCATGAGCATAGCAGTAAAAACAATGAGAAAAGGCGAGGTAGCAGAGCTTAGTATGAAATTCTTCTATGGCCTGACTCAAAATTCAAATAGAATAATCGAGCTTAATGGTTTACCAGATTCTAATGTAATTAGCATCAAACTCGAGCTGGTATCGTGGAAAATTGTTACTGATATCACAGGAGATAAGAAAATACTAAAGAAAATTAATAAACTCGGCGATGGATTTGATCGTCCTAACGAAGGATCTCGTGTGAAAGTTACATATATATGCAAAGGAGAAGATGGTACGATTATTGATAGGAAAGGATCAAAGGAAGAACCTTTTGAGTTCACAATTCAAGAAGAACAAATGCATGAGGGTCTAGAAAAAGCAATTATGACAATGAAAAAAGCAGAACAAGCTTTGGTTACTGTCAATGCTGAAAAAACCCTTTGTTATGAAGTTGAATTGATTGATTTCATTAAGGAGAAACCATTTTGGAAAATGGATACTCAAGAGAAACTAGAAGCTTGTGAGCAGAAGAAGCATGATGGAAATCTTCTGTTTAAGGCTCAAAATTTCAGGCACGCCTCCGAGAAATACGAAAAGGCTGTAAAATACATTGAATTTGATCACACATTCAGCGACGACGAGAAGCGTCACGCTAACACATTGAGGTTGTCATGTAATTTGAACAATGCTGCTTGTAAACTTAAATTGGAGGAGTACACAGAAGCTGCCAAGCTATGCACAAAGGTACTAGAACAAGATCCATTGAATGTTAAGGCTCTTTACAGAAGAAGCCAAGCATACCTTAAAACATCAGACTTGGAGAAAGCTGAAGCTGACATTAAAAGAGCACTGATTATTGATCCAAATAATAGAGACATTAAACTTGAGTACAAAGAGCTCAAACTGAAGCAAAGGGAATACAATAAATATGAAGCTGACATCTTTAGCACAATGGTTTCAAAGATGAATTAG 1503 0.3786 MTLSHQIGNEGLTKQILTKGVSWQTPFSGDQVQVHFRGQIENGPSLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGERAIFKIPPALAYGEIGSPPLIPPNATLVFEIEMLCWSTIRDLTGDGGIMKKTIMEGEGWATPKELDEVLVKYEAKLENGMLIKSDKGVDFNTNDGYLCPAMSIAVKTMRKGEVAELSMKFFYGLTQNSNRIIELNGLPDSNVISIKLELVSWKIVTDITGDKKILKKINKLGDGFDRPNEGSRVKVTYICKGEDGTIIDRKGSKEEPFEFTIQEEQMHEGLEKAIMTMKKAEQALVTVNAEKTLCYEVELIDFIKEKPFWKMDTQEKLEACEQKKHDGNLLFKAQNFRHASEKYEKAVKYIEFDHTFSDDEKRHANTLRLSCNLNNAACKLKLEEYTEAAKLCTKVLEQDPLNVKALYRRSQAYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQREYNKYEADIFSTMVSKMN* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1906 500 Gene3D - 4 119 IPR046357 GO:0003755
Psa3g1906 500 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 29 117 IPR001179 GO:0003755
Psa3g1906 500 PANTHER PEPTIDYLPROLYL ISOMERASE 5 236 - -
Psa3g1906 500 PANTHER PEPTIDYLPROLYL ISOMERASE 328 500 - -
Psa3g1906 500 PANTHER PEPTIDYLPROLYL ISOMERASE 231 321 - -
Psa3g1906 500 Gene3D Tetratricopeptide repeat domain 337 494 IPR011990 GO:0005515
Psa3g1906 500 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 145 233 IPR001179 GO:0003755
Psa3g1906 500 Pfam Tetratricopeptide repeat 411 467 - -
Psa3g1906 500 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 261 321 IPR001179 GO:0003755
Psa3g1906 500 SUPERFAMILY TPR-like 341 497 IPR011990 GO:0005515
Psa3g1906 500 Gene3D - 234 336 IPR046357 GO:0003755
Psa3g1906 500 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 257 321 IPR001179 GO:0003755
Psa3g1906 500 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 26 114 IPR001179 GO:0003755
Psa3g1906 500 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 141 207 IPR001179 GO:0003755
Psa3g1906 500 ProSiteProfiles TPR repeat profile. 434 467 IPR019734 GO:0005515
Psa3g1906 500 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 236 - -
Psa3g1906 500 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 328 500 - -
Psa3g1906 500 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 231 321 - -
Psa3g1906 500 SMART tpr_5 351 384 IPR019734 GO:0005515
Psa3g1906 500 SMART tpr_5 400 433 IPR019734 GO:0005515
Psa3g1906 500 SMART tpr_5 434 467 IPR019734 GO:0005515
Psa3g1906 500 Coils Coil 301 321 - -
Psa3g1906 500 Coils Coil 470 490 - -
Psa3g1906 500 SUPERFAMILY FKBP-like 7 116 - -
Psa3g1906 500 SUPERFAMILY FKBP-like 122 203 - -
Psa3g1906 500 Gene3D - 120 233 IPR046357 GO:0003755
Psa3g1906 500 SUPERFAMILY FKBP-like 230 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1906 Psa-Chr3 172274979 172278164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1906 6 499 Calmodulin-binding Proteins AT5G48570 52.418 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1906 - - gmx:100785412 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1906 3 172274979 172278164 Psa3g1906 3 172274979 172278164 ECH