LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa3g1897	ATGTTGATGCTTGGTATACAAGGTGATCGATCACACACTCCAGTGACGTCCATGTTTTTCAATCAACAAGGAGATCTTCTTTTAGCCAGTTATGGTGATGTCTATGCTAGGCCAAATGGAATCCGGGAGAGTTCTATGCCATATACTGCATGGAAGCACATGCCACAAACATGTAGTTCTGCTGAAAATGTGTCGGCAGAAGCTGTTGAAAGATTTTCGTTGCTTGCAATTGTTTGGGAGCGGAAAGGTCAGGTTGCAAGATTGGTCAAAACAGAATTAAAAGTATATGGAGAATGGTCTCTCGACGGTGCGGCTATAGGGATGGCATGGTTAGATGATCAAATGCTGGTAGTGCTCACTTCAATTGGACAGTTGAATTTATTTACTGAAGATGGAACTGTGATTCATCAAACAAGTTTTACTGTGATTCATCAAACAAGTTTTGATCAATCAAAGAATTCAGAGCCGGCTTTTCTTGCCAAGAGATTAGTACAATGCAATGCAAAAGTCGCATTTGGACTACTTCAGGACGAATACATGGGTCAACAGCAAATAGAATTGCCGACATGTTTGATGATATTGCGGCTGTCACCACAGCGACAACACAGTCATAAGTTGAGAAGTCCAGCACGCGTCGAGCAGTTGCTAGAAGATCAAGCTCGGCATCATGATCACAGGGACTGTACTCCAAATTTAGTAGAAGGATCCCACCTTGATCAAACTAGAAAAGATGTTCATGATGAAACAAGTTGCAAGCAGAACTCCCCAAATAGTTGTAAGAGTGATGAAGATAAAAACATTCAAAGAGAGTCGAGTTTTTCAGTTACAGAATCTCGAGGTGAAAGAAACGTGCGAAAGAAGGACAAGTCAAGTGAGAAAGATATTAGTGATAGTCAACCCGTTGAGGAACAGAAGTCTTGTAGTCCCACTATTGATCTAAAAGAATCTCCACACCTAGAGCCACAACCACCTTCTGATGAGTTGCTTTCAATGGAAGAAGATATAGACATTTGTGACACCCCTCCTCATGTCCCTGTGGTGACAGATTTGTCATCAGGAAAATGGTTTTACCTTGACTACGGAGGTGTAGAAAATGGGCCTGCCAAATTGTGTGACATTAAGTTCCTTGTTGATGAAGGGGTACTAATTGTCGCCATTGGCTGCTCAGAGTTTCCCGTCCATTGTGTCAGATACAATAACTCAGCACGTCTGCTTGCAGCTATTGCCAATGATGATATTTTACCTATTCTAAACTACTTTAAAGTTGCAGATGGTAGCGAGCCACATGTTGCTACCCTTTTTACTGCTTTCCTATGTATTGGGTGTGTCATCATTGGGAATCTGGATCTTATCACTCATACTGTGACCATGTTTTTCCTTCTGTGTTATTCGGGTGTTAACTTGTCCTGCTTCCTTCTCGATCTACTAGATGCTCCTAGTTGGCGTCCTCGGTGGAAATTTCATCATTGGAGTTTGTCACTTCTAGGAGCATTACTTTGTGTAGTGATCATGTTCCTAATCTCTTGGTCATTCACTGTGGTTTCTTTGGCCCTTGCAAGTCTTATATATAAGCACGTGAGCATCAAAGGAAAGGCTGGAGACTGGGGAGACAGTTTCAAAAGCGCTTATTTCCAACTTGCACTTCGTAGCCTTCGGTCTCTAGGAGCAAACCAAGTGCACCCAAAGAATTGGTATCCAATTCCACTAGTGTTTTGTCGGCCTTGGGGAAAACTGCCCAAAAATGTTCCCTGTCATCCCAAACTTGCTGACTTCGCTAACTGTATGAAGAAAAGGTTTTCGAGGCATCGTTCAGACAATGGGCCTTGGAAACCTCAAGCCGAACATCGTGTGATGCGTTATCCAGAAATCTGGCGCAGGAGAAACTTAACAGATATCCCCGCCACCTTTGTTGGTATAATTAATGAGTGCATTGTTGCAAACCAGGCAGTAGTTATAGTAAAGGGTCTTGATGAATGGCCAAATGTGTACCAGAACCATATATGGTGGTCTCATGCTACTTCTCTCTCAATTGCTTCTTACCAAGGAGACTTGAAGAGTTGTAAGATTCAGGTTTTCTGTATTGCAGAAGAGGAAGCAGATGCAGAGGGGCTGAAAGCTGATGTTAAAAAATTCCTTTACGATCTTCGGATGCAAGCAGAAGTCTTTGTCATTATAATGAAATGGGATGTACAAGTGGATAGTGGAACTCCGCAAGATGAATCATTAGATGCATTTACCAGTGCTAATCAAAGAATTGTTGATTATTTAACCGAGATGAAGGCAAGAGCAGAGAGAGAAGGTGCAGAGGCTTCCTTTGCTTTTTCAAGTTTAGTTGTTGGAAAGGAAGATATGCAGAAGTTAGCATTTAAAGCAAATGCTATAGACAAATTCTACAATCACTTGCAAAATTGTGATCTACATCCCAAACGTCTTGAAGGGATATTTCTAGCACTGGCCGATCTTTGCTCAAAACTGGAATGCTGCAGGGCGAGGTTTATGTCATTGCAGGTCTTAAATCTACTAATTAATGCCTTAACCCATGATGAAGCCAATGTGCGGACTGCAACTTGCATTTGCTTAAAAAAAACTGTCTCACGCTCAATCAAGAATTTGAGTGCAGGTTATTTCATGAATGAAAGGATTGTCATTCCATTAGCACGGCTTCTCTCTGATCTTTGCACTTCTGTCCAGGTTGCAACCCTTGTTGCTATTAGCAACATAGTAGTGGACTTTACATCAAATAAGTCAACATTCATACAATGCGGTGGCATTAAAGAGCTTGTCCATTTGACAAAGTCTATGGATTCGTCTTTAAGGTTGAATGCTGTGTGGTCCTTGCGGAACGTGATATTTCTCGCTGATAAGATGTGCAAGGAAGCAATTTTTATGGAGTTGACTGCTTCTTCAGTAGCTAGCCTTATCTGTGATCCCGAGCCTTCAGTTAATTCTAAAACAAACTTTTCAGCTAACAACACAGCAGAGAGGAGAGGAGTCATATATAAAAAGCAATCACTATTCACGAAAAACCTTAAGTTTTGGATAGCCGCCACTGTTCACCCACAAGGAAGGGAGAATTCTGAAAAACATAAAGCACTGTTACTGTTCACTAAGAGAAAGAGGAGCCGACGGCAAGGAGAAAAGAAAGCCATATTTTTTCTTGGTGGTGAAAAGCGGACAAGAAGATCAAAACCGGTTCAGGCGAAACGCTTACTCACATTCATCGGTCGAGCTCGCCGCAACCGTGCTTGA	3249	0.4189	MLMLGIQGDRSHTPVTSMFFNQQGDLLLASYGDVYARPNGIRESSMPYTAWKHMPQTCSSAENVSAEAVERFSLLAIVWERKGQVARLVKTELKVYGEWSLDGAAIGMAWLDDQMLVVLTSIGQLNLFTEDGTVIHQTSFTVIHQTSFDQSKNSEPAFLAKRLVQCNAKVAFGLLQDEYMGQQQIELPTCLMILRLSPQRQHSHKLRSPARVEQLLEDQARHHDHRDCTPNLVEGSHLDQTRKDVHDETSCKQNSPNSCKSDEDKNIQRESSFSVTESRGERNVRKKDKSSEKDISDSQPVEEQKSCSPTIDLKESPHLEPQPPSDELLSMEEDIDICDTPPHVPVVTDLSSGKWFYLDYGGVENGPAKLCDIKFLVDEGVLIVAIGCSEFPVHCVRYNNSARLLAAIANDDILPILNYFKVADGSEPHVATLFTAFLCIGCVIIGNLDLITHTVTMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGALLCVVIMFLISWSFTVVSLALASLIYKHVSIKGKAGDWGDSFKSAYFQLALRSLRSLGANQVHPKNWYPIPLVFCRPWGKLPKNVPCHPKLADFANCMKKRFSRHRSDNGPWKPQAEHRVMRYPEIWRRRNLTDIPATFVGIINECIVANQAVVIVKGLDEWPNVYQNHIWWSHATSLSIASYQGDLKSCKIQVFCIAEEEADAEGLKADVKKFLYDLRMQAEVFVIIMKWDVQVDSGTPQDESLDAFTSANQRIVDYLTEMKARAEREGAEASFAFSSLVVGKEDMQKLAFKANAIDKFYNHLQNCDLHPKRLEGIFLALADLCSKLECCRARFMSLQVLNLLINALTHDEANVRTATCICLKKTVSRSIKNLSAGYFMNERIVIPLARLLSDLCTSVQVATLVAISNIVVDFTSNKSTFIQCGGIKELVHLTKSMDSSLRLNAVWSLRNVIFLADKMCKEAIFMELTASSVASLICDPEPSVNSKTNFSANNTAERRGVIYKKQSLFTKNLKFWIAATVHPQGRENSEKHKALLLFTKRKRSRRQGEKKAIFFLGGEKRTRRSKPVQAKRLLTFIGRARRNRA*	1083

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa3g1897	1082	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	399	598	IPR004842	GO:0006811\|GO:0015377\|GO:0016021
	Psa3g1897	1082	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	616	790	IPR004842	GO:0006811\|GO:0015377\|GO:0016021
	Psa3g1897	1082	SMART	arm_5	869	909	IPR000225	GO:0005515
	Psa3g1897	1082	SMART	arm_5	911	951	IPR000225	GO:0005515
	Psa3g1897	1082	Pfam	Armadillo/beta-catenin-like repeat	914	948	IPR000225	GO:0005515
	Psa3g1897	1082	Gene3D	Amino acid/polyamine transporter I	377	533	-	-
	Psa3g1897	1082	Pfam	Amino acid permease	401	550	IPR004841	GO:0016020\|GO:0055085
	Psa3g1897	1082	PANTHER	CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1	616	790	-	-
	Psa3g1897	1082	PANTHER	CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1	399	598	-	-
	Psa3g1897	1082	MobiDBLite	consensus disorder prediction	258	300	-	-
	Psa3g1897	1082	MobiDBLite	consensus disorder prediction	221	250	-	-
	Psa3g1897	1082	Gene3D	-	743	995	IPR011989	-
	Psa3g1897	1082	SUPERFAMILY	ARM repeat	768	959	IPR016024	-
	Psa3g1897	1082	MobiDBLite	consensus disorder prediction	221	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa3g1897	Psa-Chr3	171795449	171800809	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa3g1897	399	789	Inorganic Solute Cotransporters	AT1G30450	57.860	1.69e-163	503

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa3g1897	K14427		-	nnu:104610715	551.977