Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1896 ATGACTATATTTGTCTCCATACTAGACGGGGATTACCATGAATGTGCGGAAGATGCCAAGATAGCTTGTAAACAACTTAGTACCTACATAGAGTACAAGAATTGTGAAGGTGTGGCCGAGATTGTTGTAGCTCCTAACATGTCTGTAGGTTTTCGAGGCATCGTTCAGACAATGGGCCTTGGAAACCTCAAGCCGGACATCGTGGTGATGCGTTATCCAGAAATCTGGCGCAGGGAGAACTTAACAGATATCCCCGCCACCTTTGTTGGTATAATTAATGACTGCATTGTTGCAAACAAGGCAGTAGTTATAGTAAAGGGTCTCGATGAATGGCCAAATGTGTACCAGAAGCAATATGGTACAATTGACTTGTATTGGATTGTAAGAGATGGTGGTCTCATGCTACTTCTCTCTCAATTGCTTCTTACCAAGGAGAGCTTTGAGAGTTGTAAGATTCAGGTTTTCTGTATTGCAGAAGAGGAAGCAGATGCAGAGGGGCTGAAAGCTGATGTTAAAAAATTCCTTTACGATCTTCGGATGCAAGCAGAAGTCTTTGTCATTACAATGAAATGGGATGTACAAGTGGATAGTGGAACTCCTTTTCAAAGGCCCCTGAATTCCACCCAAAATATTTCCCAATATTCCAGGTCCCGACTCCACAGACAGAGGCTTGGGTGCACGTACCACCTGATCATTAATCATCAACCTAACAGTTTCCTCATAAACTTGGATAGCGGCAGAATCTCCTTCCAAACGGATGATTTCACTATTAAGATTTTCTCGACCGCTACACATCAGTTCATACATAGCAGCCTCATTCATGTCATCTGCAACCACGACGGATCCAGATGCCTTACGAACGTAATCGTATTCGCTCTCCTTCTCGGAGTCTTCGAAAGTTGTCATGCAACCTCCATGAACGGCAGACAATTATCCCAATCAACACGAGATGCTAGCTTAGAGTCCATAGCTACAATTCTTAAAAAGAATCCAGGAGTTGTCGCTAAGTTTTCGAAACTTCAAAATGGAAGAGCGTTGCGTTCTGTAATTGAATTAACCAAGGATCGACACTCTCGGACAAGGTTGCTGGCCTGCTTGTGCCTAATCTGTATAAAGAATTCTTCGTCGCGCGTTCTGCAATACATAGCAATAAAAACCAAATTGATATATATTTTGCTTGAGCTCCTTGACGATTCTGGTCAAGTTGGAGAAGAGGCTTCCTTTGCTTTTTCGAGTTTAGTTGCTGGAAAGGAAGATATGCAGAAGTTAGCATTTGAAGCAAATGCTATAGACAAATTCTACAATCACTTGCAAAATTGTGATCTACATCCCAAACGTCTTGAAGGGATATTTCTAGCACTGGCCGATCTTTGCTCAAAACTGGAATGCTGCAGGGCGAGGTTTATGTCATTGCAGGTCTTAAATCTACTAATTAATGCCTTAACCCATGATGAAGCCAATGTGCGGACTGCAGCTTGGATTTGCTTAAAAAAAACTGTCTCACGCTCAATCAAGAATTTGAGTGCAGGTTATTTCATGAATGAAAGGATTGTCATTCCATTAGCACGACTTCTCTCTGATCTTTGCACTTCTGTCCAGGTTGCAGCCCTTGTTGCTATTAGCAACATAGTAGTGGACTTTACACCAAATAAGTCAACATTCATACAATGCGGTGGCATTAAAGAGCTTGTCCATTTGACAAAGCCTATGGATTCGTCTTTAAGGTTGAATGTTGTGTGGTCCTTGCGGAACGTGATATTTCTCGCTGATAAGATGTGCAAGGAAGCAATTTTTATGGAGTTGACTGCTTCTTCAGTAGCTAGCCTTATCTGTGATCCCGAGCCTTCTGTTCAACACCAAGCTTTGGCCCTTGTTCGCAATTTTGTTGATGGATGTATGGATTGTGTTGAATTTGCTTTTGCTGAAAATGGTATCATACTGGATGCTGTTGGAAGGCAATTAAAAAAATCCTCAAGAGTTGAAATCATTATACATGGGATATACGCAGTCAGCAATATTGCAAGTGGAAATGAGTGTCATAAAGAAGCCATAATGCAGTTTCTCTTTCCAGAAGAAGAAAGTGGATCTCACTCTTTCTTGAGTGCAGTATTTGCTGCTTTAAATGACGAGGATCCTGAACCATGGCAAATCCAGATATTTTGTTCAATTGATTCAAATTCAGTTAAACGATTTCCAGAAGACCCGAGCAAGGAAACTGATAAGAACCTTCCCTTTCCACCGGTTGCTTCAAAACCTGCGAAGAAGTTACCCCTCAATGCAGTGACATCAATAATTGATGGCTTGAAGAAGTTGTATGTGGAGCGGCTAAAACCGTTGGAGGCTACTGATCGATTCAATGATTTTGTATCTCCCTTATTGACCAACAATAATTTTGATGCTAAGCCAATGGTCATGCTTCTCGGTCAATATTCCACAGGGAAAACAAGCATTGCATTGCATTTTAGTCCATTCGTTGAATCCTATCAAACTGTTACACGATCCACGCCGAAGCTGTTGCAATACAAATACCCAAAATCAGTTAATTCTAAAACAAACTTTTCAGCTAAGTGA 2571 0.4131 MTIFVSILDGDYHECAEDAKIACKQLSTYIEYKNCEGVAEIVVAPNMSVGFRGIVQTMGLGNLKPDIVVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNVYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEEADAEGLKADVKKFLYDLRMQAEVFVITMKWDVQVDSGTPFQRPLNSTQNISQYSRSRLHRQRLGCTYHLIINHQPNSFLINLDSGRISFQTDDFTIKIFSTATHQFIHSSLIHVICNHDGSRCLTNVIVFALLLGVFESCHATSMNGRQLSQSTRDASLESIATILKKNPGVVAKFSKLQNGRALRSVIELTKDRHSRTRLLACLCLICIKNSSSRVLQYIAIKTKLIYILLELLDDSGQVGEEASFAFSSLVAGKEDMQKLAFEANAIDKFYNHLQNCDLHPKRLEGIFLALADLCSKLECCRARFMSLQVLNLLINALTHDEANVRTAAWICLKKTVSRSIKNLSAGYFMNERIVIPLARLLSDLCTSVQVAALVAISNIVVDFTPNKSTFIQCGGIKELVHLTKPMDSSLRLNVVWSLRNVIFLADKMCKEAIFMELTASSVASLICDPEPSVQHQALALVRNFVDGCMDCVEFAFAENGIILDAVGRQLKKSSRVEIIIHGIYAVSNIASGNECHKEAIMQFLFPEEESGSHSFLSAVFAALNDEDPEPWQIQIFCSIDSNSVKRFPEDPSKETDKNLPFPPVASKPAKKLPLNAVTSIIDGLKKLYVERLKPLEATDRFNDFVSPLLTNNNFDAKPMVMLLGQYSTGKTSIALHFSPFVESYQTVTRSTPKLLQYKYPKSVNSKTNFSAK* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1896 856 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 8 290 712 IPR038739 -
Psa3g1896 856 Gene3D - 293 498 IPR011989 -
Psa3g1896 856 Gene3D - 499 719 IPR011989 -
Psa3g1896 856 Pfam N-terminal EH-domain containing protein 767 799 IPR031692 -
Psa3g1896 856 Gene3D - 742 807 - -
Psa3g1896 856 SUPERFAMILY ARM repeat 314 595 IPR016024 -
Psa3g1896 856 SMART arm_5 547 587 IPR000225 GO:0005515
Psa3g1896 856 SMART arm_5 505 545 IPR000225 GO:0005515
Psa3g1896 856 SMART arm_5 632 675 IPR000225 GO:0005515
Psa3g1896 856 Pfam Armadillo/beta-catenin-like repeat 549 584 IPR000225 GO:0005515
Psa3g1896 856 Pfam Solute carrier family 12 117 185 IPR018491 GO:0006811|GO:0016020|GO:0022857
Psa3g1896 856 Pfam Solute carrier family 12 21 106 IPR018491 GO:0006811|GO:0016020|GO:0022857
Psa3g1896 856 SUPERFAMILY ARM repeat 608 687 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1896 Psa-Chr3 171743558 171746818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1896 1 197 Inorganic Solute Cotransporters AT1G30450 85.354 5.53e-106 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1896 K23336 - gmx:100779498 595.504