Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1893 ATGCCCGGCGAAATTAAAAGCACGAGCACCAGACATCGGAGAGCCGAGGAAGTGATTGGTGGTAACACAGAAGCTATTAAAACCCTCAGAGATCTCATTACATTTCCTTGGCGTCTCTTACCTTGTGATGCAAAGAGACTTGGGGTTAAATTTGGAAGAGGTGTTTTGTTACATGGTTCACCTGGCACCGGAAAGACAAGTTTGGTACGGGCAGTTGTTGAAGAATGCGGGGCAATTTTGACGATTATAAGCCCAAACACCGTTCATAGCGCACATGTTGGTGAAAGTGAGAGAAATCTCCGCGAGGCTTTTTCTGAGGCATCTTCTCACGCAGCCTTGGGCAAGTCTTCAGTTATCTTTATAGATGAAATAGATGTACTTTGTCCTCGCCGAGATTCCAGGAGGCTTATTGCTTCCCAACTTCGTTTTTTGATGGACTCAAACAAAGCAACCTCTTCTACACCGGGGGTAGTTGTGGTTGCATCAACTAACAGGGTGGATGCAATTGATCCTGCCCTAAGAAGGAATGGGCGTTTTGATGTTGAAATTGAAGTTACAGTCCCAAATGAAAAGGAGCGCCTTCAAATTCTAGAGCTGTATACAAAGAAGATTCCTCGGGATTCACGCGACTTAGAATTTATTGCTGCATCATGCAACGGTTATGTTGGAGCTGATTTGGAGGCTCTGTGTCGTAAAGCTATCGAATCTGCCATTAAAAGGTCCAAAAATACAAATAAAGATGTTAATGATTCCAGTTTAACGATGAAAGATTGGAAGAGTGCAAGGTCTCTTGTTCAACCAAGTATAACAAGAGGCATTACTGTGGAAGTTCCCAAAGTGACATGGAAAGATATTGGGGGATTGAAAGATGTGAAGACAAAGCTCGAGAAAGCTATTGAGTGGCCTATCAAGTATCCTGATGCATTTTCAAGACTTGGAATAACCCCTGTTCGTGGAATTCTTCTCCACGGGCCTCCAGGATGTTCCAAAACTACTCTTGCTAAAGCTGCTGCAAATGCTGCTAATGTTCCGTTCTTTTCCTTGAGTGGTGCAGAATTATTTTCAATGTATGTTGGAGAAGGAGAAAGTTTGCTTCGTGAAATATTTCGCAAAGCACGGCTTGCTGGAAAAAGTATAATATTTTTTGATGAAGCTGACGTAGTAGCTGGGAAACGGGGTGATAGTTCGAGTGGTAGTTCGAGTGGTAGTGCCGCAGTTGGAGAGAGGCTTTTATCAACTCTGCTTACTGAAATGGATGGTTTAGAAGAAGCTAAAGGAGTCCTTGTTTTAGCAGCCACAAACCGCCCTTATGCAATTGATGCTGCACTTATGCGTCCCGGTCGATTTGATCAGATTTTGTATGTGCCACCACCTGATTTGGAGGGTCGAGTTGAGATACTTAATGTGCACACACGAAGGATGCAATTAGGGAGTGATGTTGATCTCAGAAGACTAGCAGAAGATACCGAGTTCTTCACGGGTGCTGAACTAGAGGGATTATGTAAAGAAGTTGGAATAGTAGCTCTAAGGGAAAACATGGACGCCACTGTTGTTTTTGACCGTCATTTTCAGATCGTGAAGAATTCCTTAAAACCAGCATTAACAGCCGATGTCATTGATTCATACTCATCTTTTAGAAGAACCTCATCTCGAGTTTTGCCTAAGATTGACCAAGAACATAGAGATGGTTGA 1692 0.4309 MPGEIKSTSTRHRRAEEVIGGNTEAIKTLRDLITFPWRLLPCDAKRLGVKFGRGVLLHGSPGTGKTSLVRAVVEECGAILTIISPNTVHSAHVGESERNLREAFSEASSHAALGKSSVIFIDEIDVLCPRRDSRRLIASQLRFLMDSNKATSSTPGVVVVASTNRVDAIDPALRRNGRFDVEIEVTVPNEKERLQILELYTKKIPRDSRDLEFIAASCNGYVGADLEALCRKAIESAIKRSKNTNKDVNDSSLTMKDWKSARSLVQPSITRGITVEVPKVTWKDIGGLKDVKTKLEKAIEWPIKYPDAFSRLGITPVRGILLHGPPGCSKTTLAKAAANAANVPFFSLSGAELFSMYVGEGESLLREIFRKARLAGKSIIFFDEADVVAGKRGDSSSGSSSGSAAVGERLLSTLLTEMDGLEEAKGVLVLAATNRPYAIDAALMRPGRFDQILYVPPPDLEGRVEILNVHTRRMQLGSDVDLRRLAEDTEFFTGAELEGLCKEVGIVALRENMDATVVFDRHFQIVKNSLKPALTADVIDSYSSFRRTSSRVLPKIDQEHRDG* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1893 563 Gene3D - 459 525 - -
Psa3g1893 563 SMART AAA_5 51 189 IPR003593 -
Psa3g1893 563 SMART AAA_5 316 459 IPR003593 -
Psa3g1893 563 CDD AAA 52 185 - -
Psa3g1893 563 Gene3D - 4 188 IPR027417 -
Psa3g1893 563 Gene3D - 270 458 IPR027417 -
Psa3g1893 563 ProSitePatterns AAA-protein family signature. 427 445 IPR003960 GO:0005524|GO:0016887
Psa3g1893 563 PANTHER AAA-FAMILY ATPASE 115 530 - -
Psa3g1893 563 PANTHER AAA-FAMILY ATPASE 17 180 - -
Psa3g1893 563 CDD AAA 316 457 - -
Psa3g1893 563 Pfam ATPase family associated with various cellular activities (AAA) 320 456 IPR003959 GO:0005524|GO:0016887
Psa3g1893 563 Pfam ATPase family associated with various cellular activities (AAA) 55 186 IPR003959 GO:0005524|GO:0016887
Psa3g1893 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 517 IPR027417 -
Psa3g1893 563 Gene3D - 189 269 - -
Psa3g1893 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 264 IPR027417 -
Psa3g1893 563 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 115 530 - -
Psa3g1893 563 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 17 180 - -
Psa3g1893 563 Pfam AAA+ lid domain 210 258 IPR041569 -
Psa3g1893 563 Pfam AAA+ lid domain 479 523 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1893 Psa-Chr3 171294758 171299259 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1893 252 532 Calmodulin-binding Proteins AT3G56690 45.552 2.66e-79 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1893 - - gmx:100814288 772.311