Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1890 ATGCTTCGCTTGGTGATACATAACGACAATCTAGATTCCGGCGAACTCGGTTCCGGTACAGCCGGTGAAGAACCGGCCAGGACACTCAAAAGACCACGACTTGTATGGACCCCACAACTCCACAAACGTTTTGTCGACGCTGTAGCGCACCTCGGAATAAAAAACGCTGTTCCGAAGACGATAATGCAGCTTATGAGTGTTGACGGTTTAACCAGAGAAAACGTGGCTAGTCACTTGCAGAAATATCGGCTTTATCTCAAACGCATGCAGGGAATTTCCTCCGCCGGTGGCGGTGGTTCTGGTGGTGGCTCTGTCGGAGTCAATGACCCTGCCACCGACCATCTATTTGCTAGCTCACCTGTGCCACCGCATTTCCTTCACCCGGTTGCTCGGCCGAATTCCGATCACTATATGCCTTTTGTTCCTGTACCTGCCATTCACCATCAGCAGCAACTGGCTGCAGCTCAGTATCACCGGCCGGTGGGACATTTCGGGTCGCCGCCGAATGGTCATTTTGACAATCCATTCTTGTCTAGACAACAACAGCATCAACAGCAACACCAACACCAGCAGCAGCTTCATAGGATTGGGGCACAAATGCATCATAACCCTGTTGGTGGTTATGTGGAGGATATGGAATCAGCGAATGCGTCGGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACCGGAGATGATTGA 699 0.5093 MLRLVIHNDNLDSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSAGGGGSGGGSVGVNDPATDHLFASSPVPPHFLHPVARPNSDHYMPFVPVPAIHHQQQLAAAQYHRPVGHFGSPPNGHFDNPFLSRQQQHQQQHQHQQQLHRIGAQMHHNPVGGYVEDMESANASGGRKVLTLFPTGDD* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1890 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 87 IPR017930 -
Psa3g1890 232 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 11 232 IPR044841 GO:0003700|GO:0006355
Psa3g1890 232 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 11 232 - -
Psa3g1890 232 SUPERFAMILY Homeodomain-like 28 88 IPR009057 -
Psa3g1890 232 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Psa3g1890 232 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 84 IPR006447 GO:0003677
Psa3g1890 232 Gene3D - 28 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1890 Psa-Chr3 171032868 171034944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1890 12 232 G2-like Transcription Factor Family AT3G10760 56.226 1.04e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa3g1890 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1890 - - gmx:100815363 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1890 3 171032868 171034944 Psa3g1890 3 171032868 171034944 ECH