Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1889 ATGTCTTCGAGTTCAAAGCTTAATAGTAGTAGTAAAAAAAAGCAATCGAAATCGCAATCGAGGTTATCATCATCTTCAATTTCCGAGCCGGCCACTCCACCCTGCACCATAGCCGAACCACAGAACCTCGCCTCTCTCCGCCAAGAAGCTTCTCGAATATTCCCACCCTTCATTTCAGAATCGGCTTTGGTAGGCGAAATCACCGACGTCGAGTCTACTGATTCTCTTTCCAAAGGCTCTAAAATTTGGCTTTCCGAGTCTTCCATGGTGGCATCTTCTCTTGCTCCGGGTTCACTTGTTTCGGTGTCTATTCCCTCTTCAAGTAAAGAGATTACGCAATTGCATAACTTTCCTCTCACGTCATTGACTATTGAATGTGTCAGATACTACGGATTGGAAACTTGCAACACATTGAATCATGTTGCAGGAAACTACTTTGCTATTGCAACTGTGTTTCCGTCTAAGAAGGTATTGAAGAGTGGAGTACGTCTATCTTCTAATCTTTCCATTGTCATGGGATGTCCTCCTTTGGGCATAAGTGTGTTTGTTCACCCATTACAGAAACAATACACATCTTGTATTGCAAATGGGAGCAATGGACTGCATTCTGGAGAAAAAGTATATAATTGCAAGGAGTTATATCTTCAGTTGGCTCCTTGTAAGAGTGGACTACCATTGAAAGTCAGTAATTTCCTCCCATTAGACGTGTCTAAGTCGAAATCCCGTGCCCAATCTGAGAATGATATTGTTGCATCTCCTAAAACACCTTCTTATGGATCGAAGTTTTCTAATGGAACTGTGTATTCTTCCCCCGTATTTGAAGATTCAGCATCAAGTGTAACGAATTACAAAGGTCAATCGGTGACTTCATTTGATGTTAGCAAGGCATTAGGAGATGAAAGTTCCAAAAAATTACTAGAAACATGTGCCACTTCATGGTTATACTCTCGTTGTTTATTGCTAGGGAATCTTGTCAGTGTCCCAATGTTTTCTGAGTTTTGCATTTTCCAAGTGATGGGAATTAAAAAGGTGCCAGCTACCACACATGACTATCGTTCATTGAATGGGAGCAGTAATTTAAATATTGAGGATTCTGATATAGTAGAGGATGGAAATCTGGCTTTCACTGTCAATTGGGAAACAAAGGTATTTTTATCTTTGCCATCAAATGAAGCATTTGAAGAGTCAGTTCTAAGGGATTTATCGTGTTTGAAACTTGATCACAAGGTTGTTAAACCTAGCATACATAATAATATTTCTAAATTAGGTGGTTTATCTAAAGAAGAAACGCTTTTAAAGGAAACAATTTCGTTTTTAGGGGACGATATTTTAACAAGATTTGGTATGCATAATACTAAAGGAGTCCTTCTTCATGGCCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGATGCTGGGATCAGATTTTTCTCAATAAATGGACCCGAAATTGTTACCTCAAATTACGGTGAAAGTGAGAAAGCATTGCAAGATGTTTTTGATTCAGCCATTCAAGCTGCACCTGCCGTGGTATTTATAGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGTGGTGACGAGCTATCTAACAGATTGGTTGGAACCTTATTGCTTCTGATGGATGGAATTAGAAGAAATGAAGGGTTACTTGTTATTGCTGCTACTAATAGACTTGACCAGATTGATCCAGCTCTCAGACGACCTGGAAGATTTGGCATGGAAATTGAAATCGGTGTGCCATCACAAACGCAGCGAAAAGATATTTTGCGCACTATTCTCTGTGAAATAGATCACTCTCTTTCGCAGACACAAATTGAAGAGCTTGCCTCAATAACTCATGGATTTGTAGGGGCTGATTTAGTCGGCCTTCGCGATTGGGCAACTTTTATTTGTCTTCGGCGTTATTTTGAACTTAAACATAAAGAGACTTGCAATGATAGTTCTCGTGACATAATAGAGCAACCCACTCCGTTGAATAGTGCAACAAACTCCAGATACCATTCAAGTATTGGAACTTATGAAACTATTGATAAGACGCCCGAAGAAGAGCCTATTTTGAACGTGACTTTTGAGGATTTTCAGAAGGCTAGGTCTGAAATAAGACCTAGTGCCATGAGAGAGGTGACCCTTGAGGTTCCAAAGGTTAATTGGGAAGACGTTGGTGGCCAGAAGGAGGTCAAAAATCAAGTGTTGGAAGCAGTATTATGGCCCCAAAAGCACCACGATGCATTCACCCGTATTGGGACTGATCCTCCAACAGCTATTTTGCTATTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGCTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAAATCAATTTTTGAGAAAGCAAGGGCCAATGCCCCGTCAATTGTGTTTTTTGATGAAATAGATAGTCTTGCTATAACTCGTGGGAAAGATGGTGAGAGTGTTTCAGTGTCTGATAGAGTCATGGCTCAACTTCTTGTTCAATTGGATGGTGTGCGGAAAAGAGGTGATGTTACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGATCCCGCTCTTTTACGACAAGGGCGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGATTGACAGAGAAGAGATATTTAGCATTCATTTGCGCAAAACTCCACATGATTCTGATGTTAGCATGAAAGAACTTGCTCAATTGACAGATGGTTTTACTGGGGCTGATATATCACTTATATGTAGAGAAGCAGCTCTTGCTGCATTGGAGGAAAGCTTTGATGCTTCCATTGTAAAAATGAAGCACTTTAAGATAGCAATCGAACAGGTTCAGCCAACAGAAGTTCAGTCCTACCAAAAGCTATCAGAAAAATTTCAAAGGGCCGTGTTCTCTCCTGTGATATAA 2973 0.4104 MSSSSKLNSSSKKKQSKSQSRLSSSSISEPATPPCTIAEPQNLASLRQEASRIFPPFISESALVGEITDVESTDSLSKGSKIWLSESSMVASSLAPGSLVSVSIPSSSKEITQLHNFPLTSLTIECVRYYGLETCNTLNHVAGNYFAIATVFPSKKVLKSGVRLSSNLSIVMGCPPLGISVFVHPLQKQYTSCIANGSNGLHSGEKVYNCKELYLQLAPCKSGLPLKVSNFLPLDVSKSKSRAQSENDIVASPKTPSYGSKFSNGTVYSSPVFEDSASSVTNYKGQSVTSFDVSKALGDESSKKLLETCATSWLYSRCLLLGNLVSVPMFSEFCIFQVMGIKKVPATTHDYRSLNGSSNLNIEDSDIVEDGNLAFTVNWETKVFLSLPSNEAFEESVLRDLSCLKLDHKVVKPSIHNNISKLGGLSKEETLLKETISFLGDDILTRFGMHNTKGVLLHGPPGTGKTSLAQLCAHDAGIRFFSINGPEIVTSNYGESEKALQDVFDSAIQAAPAVVFIDEIDAIAPPRKDGGDELSNRLVGTLLLLMDGIRRNEGLLVIAATNRLDQIDPALRRPGRFGMEIEIGVPSQTQRKDILRTILCEIDHSLSQTQIEELASITHGFVGADLVGLRDWATFICLRRYFELKHKETCNDSSRDIIEQPTPLNSATNSRYHSSIGTYETIDKTPEEEPILNVTFEDFQKARSEIRPSAMREVTLEVPKVNWEDVGGQKEVKNQVLEAVLWPQKHHDAFTRIGTDPPTAILLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSIFEKARANAPSIVFFDEIDSLAITRGKDGESVSVSDRVMAQLLVQLDGVRKRGDVTVIAATNRPDKIDPALLRQGRFDRLLYVGPPNEIDREEIFSIHLRKTPHDSDVSMKELAQLTDGFTGADISLICREAALAALEESFDASIVKMKHFKIAIEQVQPTEVQSYQKLSEKFQRAVFSPVI* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1889 990 Pfam ATPase family associated with various cellular activities (AAA) 455 584 IPR003959 GO:0005524|GO:0016887
Psa3g1889 990 Pfam ATPase family associated with various cellular activities (AAA) 761 892 IPR003959 GO:0005524|GO:0016887
Psa3g1889 990 Gene3D - 587 721 - -
Psa3g1889 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 712 IPR027417 -
Psa3g1889 990 Gene3D - 405 586 IPR027417 -
Psa3g1889 990 ProSitePatterns AAA-protein family signature. 863 881 IPR003960 GO:0005524|GO:0016887
Psa3g1889 990 Pfam AAA+ lid domain 915 960 IPR041569 -
Psa3g1889 990 Gene3D - 894 964 - -
Psa3g1889 990 PANTHER - 687 986 - -
Psa3g1889 990 PANTHER - 61 657 - -
Psa3g1889 990 CDD AAA 727 893 - -
Psa3g1889 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 973 IPR027417 -
Psa3g1889 990 Gene3D - 722 969 IPR027417 -
Psa3g1889 990 MobiDBLite consensus disorder prediction 1 32 - -
Psa3g1889 990 SMART AAA_5 757 895 IPR003593 -
Psa3g1889 990 SMART AAA_5 451 587 IPR003593 -
Psa3g1889 990 ProSitePatterns AAA-protein family signature. 555 573 IPR003960 GO:0005524|GO:0016887
Psa3g1889 990 PANTHER AAA-FAMILY ATPASE 687 986 - -
Psa3g1889 990 PANTHER AAA-FAMILY ATPASE 61 657 - -
Psa3g1889 990 MobiDBLite consensus disorder prediction 1 34 - -
Psa3g1889 990 CDD AAA 453 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1889 Psa-Chr3 170790752 170806277 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1889 11 987 Calmodulin-binding Proteins AT3G56690 51.838 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1889 - - cam:101494446 1425.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1889 3 170790752 170806277 Psa3g1889 3 170790752 170806277 ECH