Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1888 ATGGCTTCAAGACCCATTGTTCCTCAACAACAACAACCTAGAGGCGATGCTGCTGTGGGGGGAGTGAAACAGCATAAGAAGAACCTTGCAGCAGGCGAGGGAAGGAACCGTAGAGCAGCACTTCATGATATTGGTAATGTAGTCACGGCAGTAAGAGGTGTTGAAGTCAAGCCAAATCGTCCCATAACAAGGAATTTCTGTGCACAACTACTTGCCAATGCCCAAGCAGCTGCTGCTGAAAATAACAAGAAACAGGTCTGTCCTCCTCCTGCTGCTGTTAAGGGAGTTCCAGTGGCTAGAAGAGTGGCAGTGGCCCCTAAACCTGTTCAGAAGAAAGTCACTGCAAAACCAAAGCCTGTTGAAGTAATTGATGTAATAAGTTCTGAAGAAGAGAGCAGTAAAGAAAAGTCTGTGCTTAACAAAAAGGGAGGAGAGGTTAATTCCAGGAAGAAATCATCACGCACTCTTACTTCTGTTCTAACAGCTAGAAGCAAGGCTGCATGTGGTTTGACTAACAAACCTAAGGAGATTGTTGACATTGATGCTGCTGATGTTAACAATGAACTTGCTGCTGTTGAGTATCTTGATGACATTTACAAGTTCTACAAGTTAGTTGAGAATGAGAGCCGTCCACATGATTACATGGACTCACAACCTGAGATTAACGACAAGATGAGAGCTATACTCATTGACTGGCTAGTAGATGTTCACACAAAATTCGAACTTTCGCCAGAAGCCCTTTACCTCACAATCAACATAATTGATAGATTCTTAGCTATCAGCCTTGTGTCAAGAAGGGAACTTCAATTGGTTGGCATCAGTGCTATGTTGATGGCATCAAAGTACGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTGTGCCTCTCAGATAGAGCCTACACTCATGAACAAATACTCATCATGGAGAAAACCATCCTAGGGAAGCTTGAATGGACACTGACAGTGCCTACACCATTTGTTTTCTTAGTCCGATTCCTCAAGGCGGCTTCGGTGTCCTTACCTTCTTCTGATCTCGCTTTAGAGAACATGGCTCATTTTCTTTCTGAGCTGGGAATGATGCATTATGCTACCTTGATGTACAGCCCCTCAATGATGGCTGCAGCAGCAGTTTATGCAGCAAGGTGCACATTGAACAAAAGTCCTGTTTGGGATGAAACATTGACGATGCACACTGGTTACTCAGAAGAAGAATTGATGGGTTGTGCTAGATTGTTGGTGAGTTTTCACAGTGCTAGTGGGAGTGGAAAACTCAAGGGTGTCTATAAGAAGTATGCTGATCCTCAGAAAGGCGCTGTTGCTGTTCTTCCACCGGCGAAAAACCTTGTGTCATCTGCCGCAGTTGGTTCTTAA 1374 0.4418 MASRPIVPQQQQPRGDAAVGGVKQHKKNLAAGEGRNRRAALHDIGNVVTAVRGVEVKPNRPITRNFCAQLLANAQAAAAENNKKQVCPPPAAVKGVPVARRVAVAPKPVQKKVTAKPKPVEVIDVISSEEESSKEKSVLNKKGGEVNSRKKSSRTLTSVLTARSKAACGLTNKPKEIVDIDAADVNNELAAVEYLDDIYKFYKLVENESRPHDYMDSQPEINDKMRAILIDWLVDVHTKFELSPEALYLTINIIDRFLAISLVSRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYTHEQILIMEKTILGKLEWTLTVPTPFVFLVRFLKAASVSLPSSDLALENMAHFLSELGMMHYATLMYSPSMMAAAAVYAARCTLNKSPVWDETLTMHTGYSEEELMGCARLLVSFHSASGSGKLKGVYKKYADPQKGAVAVLPPAKNLVSSAAVGS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1888 457 MobiDBLite consensus disorder prediction 133 152 - -
Psa3g1888 457 Gene3D - 211 322 - -
Psa3g1888 457 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 28 451 - -
Psa3g1888 457 SMART cyclin_7 328 415 IPR013763 -
Psa3g1888 457 SMART cyclin_7 231 315 IPR013763 -
Psa3g1888 457 Pfam Cyclin, C-terminal domain 324 445 IPR004367 -
Psa3g1888 457 ProSitePatterns Cyclins signature. 226 257 IPR006671 -
Psa3g1888 457 CDD CYCLIN 225 314 IPR013763 -
Psa3g1888 457 PANTHER CYCLINS 28 451 IPR039361 -
Psa3g1888 457 SUPERFAMILY Cyclin-like 186 321 IPR036915 -
Psa3g1888 457 CDD CYCLIN 322 414 IPR013763 -
Psa3g1888 457 Gene3D - 197 441 - -
Psa3g1888 457 MobiDBLite consensus disorder prediction 1 22 - -
Psa3g1888 457 PIRSF Cyclin_A_B_D_E 1 456 IPR039361 -
Psa3g1888 457 Pfam Cyclin, N-terminal domain 197 321 IPR006671 -
Psa3g1888 457 MobiDBLite consensus disorder prediction 133 149 - -
Psa3g1888 457 SUPERFAMILY Cyclin-like 323 447 IPR036915 -
Psa3g1888 457 SMART Cyclin_C_2 324 446 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1888 Psa-Chr3 170787844 170790552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1888 1 451 Core Cell Cycle Gene Families AT4G37490 51.528 9.33e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1888 K21777 - mtr:MTR_7g089080 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1888 3 170787844 170790552 Psa3g1888 3 170787844 170790552 ECH