Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1878 ATGGAGAAGCGATTGATTCCACTGTTCAATCGTGTTTTGGTTGAGAAAATCGTTCCTCCATCAAAAATCAACACTGATATTTTGTTACCTGAGAAATCCTCCAAGCTGAATTCTGGAAAAGTTGTTGATGTTGGCCCTGACATTCATGGTAAGGATGGGAAGCTTCTTCATGTTGCTGTAAAAGAAGGTGACACTGTTCTTTTTCCTGAATACGGAGGAACTGAGGTGAAGCTTGATCACAAAGAGTATGTATTTATTTTCTCTTCTTACTTTCGCACAATCCTCGAACTTAATCATTCTTAA 303 0.3828 MEKRLIPLFNRVLVEKIVPPSKINTDILLPEKSSKLNSGKVVDVGPDIHGKDGKLLHVAVKEGDTVLFPEYGGTEVKLDHKEYVFIFSSYFRTILELNHS* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1878 100 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0140662
Psa3g1878 100 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0140662
Psa3g1878 100 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0140662
Psa3g1878 100 Gene3D GroES chaperonin 2 95 IPR037124 GO:0006457
Psa3g1878 100 PANTHER GROES-LIKE FAMILY PROTEIN 1 86 - -
Psa3g1878 100 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 86 IPR020818 GO:0005524|GO:0006457|GO:0140662
Psa3g1878 100 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Psa3g1878 100 CDD cpn10 4 86 IPR020818 GO:0005524|GO:0006457|GO:0140662
Psa3g1878 100 Pfam Chaperonin 10 Kd subunit 5 86 IPR020818 GO:0005524|GO:0006457|GO:0140662
Psa3g1878 100 SUPERFAMILY GroES-like 3 88 IPR011032 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1878 3 95 Calmodulin-binding Proteins AT5G20720 32.632 3.80e-06 41.6