Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1877 ATGGTGGAGAGAAGAAAGCCTCTGGTTCTGTGTTCCACTAAAAATGTCATCAATTCCTTATTGAAGTCTTCCACTTCTTCAATCGATGATTTTCCCAACTTGCATTTACCAGTTGGAATTCTCCGATTATCCAACAAATTGCCTTCTCTTGACCACTCTGCACTCATTGCTCTCTCCACTTCTCTTCTCAAAAGACTTTCCATCGCTTCTGGTTCACCGGTTTTGATACAAAATGCTGAAATGAACACGCAGCGAGTTGCAGTGGCTATTGCTCTTGACCCTCCTAGCAATGACACCCTTGACATTGATCACTCATCATCCTCTTCTAGAATAATGCTTGTTTTTCCTTCTTGTGATTTCCCTCTCAATGGCCCTTTGTTAAATGGTGAAATTGCTTATTTGTCTCCTCTTTTGGCCTTTAATCTTAACTTGCACATTTCATGTTTGAAATCCATTATTCACCACGGCCAAGATGCTTTGTCGTTCTATTTCAAACCTCAATGTCAAGTGGGTGATGAGGAGGATGCTAAAAGCATTGAAGATTCGGTCATTAATATAGAGTTGGTGCCACTCGCTCAACCTCCCAGATTTGCCTCCCTTCTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCATCCTTGATTCCATTAAACCAATTTCAGATGTTGAAACCAAAGAACGGCAAGACCTGATTGACTTGGCATTGCAGAAGTACTTTGAAGTTGATAGATATTTGTCAAACGGAGATGTTTTCGGAATTAGCATTAGTTGGAACTGTAATTCCACTATATGCATTCCTTGTAACCAAAAAACACAAAAGCAAAATGACAACCGTATCTGTTTTAAGGTCATTGCTATGGAACCATCAGATGAACCAGTTCTCCGTGTCAATAAAACCTTAACTGCGTTGGTGTTAGTAGGGAATTCCCAATCTGCCCTTCCTCCAGATTTGTTAATTGCTGGACCAGAAGGGCCCGTGCCTTTGCAAAGGGACACAGTGAAGATCTTGGCTTCAATACTTGCACCAACTTTATGTCCTTCAGCACTTTCTTCCAAGTTTAGAGTTTCGGTGTTATTATATGGCTTGGCAGGTTGTGGGAAAAGGACCGTTGTTAGATATGTTGCCCGCCGACTGGGCCTGCATGTGGTGGAATATAACTGTCACGATCTAATGGGCTCCGATAGAGCATCCGTTGCTCTAGCTCAAGCTTTCAAGACTGCTCAAAGATACTCGCCAACAATACTTCTTCTTCGTCATTTTGAGGTATTTCGAGATTCGCATTCCCCTGAGATTTCACCAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCCGTTATTAGGAAATTCACCGAGTCAGTTGGTGAACATGATGATAGTAACTCTCTGATGAAATCAAACGGCGAATTTGTGGAGAAGAATGTTGAAAAGACAAGTGGGCATCAGGTCCTGTTGATTGCTGCAGCTGATAGTTCAGAGGGTCTACCTTCAACCATCAGACGCTGCTTTAGCCATGAAACGAAAATGGGGCCTTTGACAGAAGAGCAAAGGGCTGAGATGCTATTGCATTCACTGGAAAATATTTATGGACTCCACTCTAATACTGATTTAGAGGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGTTTCATGCCCAGGGATATGTGTGCTTTAATTGCAGATGCTGGTGCCAACTTATTTCCCAGCAGCAATGCTGAAGTAGACAAAGTTGAACCCGAAGGTGCAGATAGTTCTCTTAGTTCAAAGGTGACAGAGGACAACAACGAGGCAGAAGTTTCAGCTCAAAAACCTGGGAAAGAAGACTTGGTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCGTCAGCATTGGGCACTCCAAAGGTTCCAAACGTAAAATGGGACGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTGCCTCTCTTGCATAAAGATCTATTTGCATCTGGGCTACGCAAGCGGTCGGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACGGAGTGTTCCTTAAACTTTCTTAGTGTGAAGGGTCCTGAACTGATCAACATGTACATAGGCGAGTCTGAGAAGAATGTTCGAGACATTTTTCAGAAGGCCCGATCAGCCCGTCCATGTGTCATCTTCTTTGATGAGCTTGACTCTCTTGCACCTGCTCGGGGAGCTTCCGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCACAGATGCTTGCAGAAATTGACGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCACCACTTCTTCGCCCTGGCCGTTTTGATAAATTGCTATATGTTGGCGTTAACTCTGTGCATCTTACAGAGAGCGATGCTTGGTTCCGTGCTGCAAAACGCAGGGTTTTGAATGCAGATCCAGAGTCCTCCAACCCAGATAATGAAGCCAATTCTATTGTTGTTGAATACGATGATTTTGTCCAGGTCTTAGAAGAGCTTCAGCCTTCCCTCTCGACGGCAGAGCTTAAGAAGTACGAGCTTCTTAGAGATCAGTTTGAAGGCACCTCTAAATGA 2643 0.4306 MVERRKPLVLCSTKNVINSLLKSSTSSIDDFPNLHLPVGILRLSNKLPSLDHSALIALSTSLLKRLSIASGSPVLIQNAEMNTQRVAVAIALDPPSNDTLDIDHSSSSSRIMLVFPSCDFPLNGPLLNGEIAYLSPLLAFNLNLHISCLKSIIHHGQDALSFYFKPQCQVGDEEDAKSIEDSVINIELVPLAQPPRFASLLRVAFVKIPECGILDSIKPISDVETKERQDLIDLALQKYFEVDRYLSNGDVFGISISWNCNSTICIPCNQKTQKQNDNRICFKVIAMEPSDEPVLRVNKTLTALVLVGNSQSALPPDLLIAGPEGPVPLQRDTVKILASILAPTLCPSALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMGSDRASVALAQAFKTAQRYSPTILLLRHFEVFRDSHSPEISPNDQRGNTSEVASVIRKFTESVGEHDDSNSLMKSNGEFVEKNVEKTSGHQVLLIAAADSSEGLPSTIRRCFSHETKMGPLTEEQRAEMLLHSLENIYGLHSNTDLEGFVKEIVGQTSGFMPRDMCALIADAGANLFPSSNAEVDKVEPEGADSSLSSKVTEDNNEAEVSAQKPGKEDLVNALERSKKRNASALGTPKVPNVKWDDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPPLLRPGRFDKLLYVGVNSVHLTESDAWFRAAKRRVLNADPESSNPDNEANSIVVEYDDFVQVLEELQPSLSTAELKKYELLRDQFEGTSK* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1877 880 MobiDBLite consensus disorder prediction 573 610 - -
Psa3g1877 880 CDD AAA 657 805 - -
Psa3g1877 880 CDD AAA 348 418 - -
Psa3g1877 880 Gene3D - 327 531 IPR027417 -
Psa3g1877 880 PANTHER AAA-FAMILY ATPASE 33 808 - -
Psa3g1877 880 PANTHER AAA-FAMILY ATPASE 814 876 - -
Psa3g1877 880 MobiDBLite consensus disorder prediction 586 600 - -
Psa3g1877 880 PANTHER PEROXISOME ASSEMBLY FACTOR 2 814 876 - -
Psa3g1877 880 PANTHER PEROXISOME ASSEMBLY FACTOR 2 33 808 - -
Psa3g1877 880 SMART AAA_5 354 514 IPR003593 -
Psa3g1877 880 SMART AAA_5 669 808 IPR003593 -
Psa3g1877 880 Pfam ATPase family associated with various cellular activities (AAA) 673 805 IPR003959 GO:0005524|GO:0016887
Psa3g1877 880 Pfam ATPase family associated with various cellular activities (AAA) 358 509 IPR003959 GO:0005524|GO:0016887
Psa3g1877 880 Gene3D - 631 806 IPR027417 -
Psa3g1877 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 874 IPR027417 -
Psa3g1877 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 567 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1877 Psa-Chr3 170190704 170196936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1877 639 808 Calmodulin-binding Proteins AT3G56690 43.529 4.13e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1877 K13339 - gmx:100820183 1326.61