Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1874 ATGAAGTCAGGGTCACTTGATCAGTGGAGGAGTTACTTTAGGTCATCCAGTTCGGATATTTTCGACATAATTGACAGTGCGATTGTTGTTGCTGCTACTGATTGTCCTAAGGAGTTTAAGTTGAGGAGAGATGGAATTGCTGAGAGGTTGTTTTCTGTTATGCTGAATCGCTGTAAGGACTGCGAGAAAGTTGAAACGCCGGTTACTGATAATGAGAATGATGAACTTTGCAAGAGAGGTTTTGTTAGGGATGGTGGTAGTAAGGAGAGTAAGGTGAATTGCGGTAGGGAAGATAATGGAGTGGTGGAAGTGAACCCTAATAGCAATTACACCTTTGGAGACGCGGAAGCTCTCACGGATGAGCTCGAAGCGGAATCTCAGCTTCTCACTGAGGTTTTGAGAATCAAGGAGGTTCTCAATAGCTATGAAGATGAGTCTGATTCGGTGCTGTTTGAGTCTCTGAGGAGGCTTCAGCTGATGCATATCTCTGTGGATCTTCTTAAGTCAACTGAGATTGGAAAGGTGGTCAATCCTCTTCGAAAGTATGGATCAAAGGATGTCCGTCAACTCGCACGGGTCCTCATCGATGGGTGGAAAGAAATGGTCGATAATTGGGTCAAGGGGAATGCAGCGAAACCGGCCGCAGAAGGAGGCACCCCGGATTCGATAAACCCGTCTGTTGTTGAGAATGCAGAAGATGAGGAGGAGGGAGGACTTCCATCACCTCCTTTAGACGACGGGGCTTTCTTTGTTTCTCAACCCGGTTCAATGGAGCTCTCACAGTTCTTCGATGGCATGGATGATGACGGAAATCTTCGTAAGAGTGGACCTCCTAACAAGAACCGTGACATTGGCAGAAAGCCGGCTTCCGACACTCTAGTTAAGGACAAGAGGAATTTCCCGGTTTTCAATGCAACCGCTATCCCTTCCAATGACAATAAGAGTCAGCAAATGAAGAAGACTGAGGCTGCGGTCAGGCTAAACAAACCGGTAGCTGTTGATGCTGGCCGCGGAAGACCACTGAACTCGAACATTCAGCGAAAACCTAATGTAGAGCAGAGGCCGCAGCAGAAAGCCGGGAACAGTACTGTGCCAAAGAGGCCTCTCAATGCTCTGCAAGATAAGCCGAAATGCTTAAGTGATGCTGATAAGCTCGAAGCTACCAAGCGGAAACTTCAAGAGCGTTATCAACAAGCTGAAAACGCCAAGAGGCAAAGGACAATACAAGTCATGGAAATCAATGAACTTCCAAAGCAAGGAGCTGTCCAGCGAAACACTAATTTCAAACCGGGAAATCACAACCGGCAATGGGCTAACGGTCGTAGATAG 1329 0.4718 MKSGSLDQWRSYFRSSSSDIFDIIDSAIVVAATDCPKEFKLRRDGIAERLFSVMLNRCKDCEKVETPVTDNENDELCKRGFVRDGGSKESKVNCGREDNGVVEVNPNSNYTFGDAEALTDELEAESQLLTEVLRIKEVLNSYEDESDSVLFESLRRLQLMHISVDLLKSTEIGKVVNPLRKYGSKDVRQLARVLIDGWKEMVDNWVKGNAAKPAAEGGTPDSINPSVVENAEDEEEGGLPSPPLDDGAFFVSQPGSMELSQFFDGMDDDGNLRKSGPPNKNRDIGRKPASDTLVKDKRNFPVFNATAIPSNDNKSQQMKKTEAAVRLNKPVAVDAGRGRPLNSNIQRKPNVEQRPQQKAGNSTVPKRPLNALQDKPKCLSDADKLEATKRKLQERYQQAENAKRQRTIQVMEINELPKQGAVQRNTNFKPGNHNRQWANGRR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1874 442 MobiDBLite consensus disorder prediction 330 381 - -
Psa3g1874 442 MobiDBLite consensus disorder prediction 211 243 - -
Psa3g1874 442 CDD TFIIS_I 131 203 - -
Psa3g1874 442 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 441 IPR044805 -
Psa3g1874 442 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 121 215 IPR035441 -
Psa3g1874 442 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 441 - -
Psa3g1874 442 SMART TFS2_5 129 204 IPR003617 GO:0005634
Psa3g1874 442 Coils Coil 382 409 - -
Psa3g1874 442 MobiDBLite consensus disorder prediction 274 298 - -
Psa3g1874 442 MobiDBLite consensus disorder prediction 418 442 - -
Psa3g1874 442 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 213 IPR035441 -
Psa3g1874 442 ProSiteProfiles TFIIS N-terminal domain profile. 130 205 IPR017923 -
Psa3g1874 442 MobiDBLite consensus disorder prediction 419 442 - -
Psa3g1874 442 MobiDBLite consensus disorder prediction 274 294 - -
Psa3g1874 442 Pfam TFIIS helical bundle-like domain 154 202 IPR017923 -
Psa3g1874 442 MobiDBLite consensus disorder prediction 343 368 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Psa3g1874 Med26 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1874 - - gmx:100799367 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1874 3 170093031 170096672 Psa3g1874 3 170093031 170096672 ECH