Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1872 ATGGATTCTCAAGAACCCTTTTCGCAGTCCGAAACGGAAACCTACCTAGCTGGCTTCGTCATGGCCAACATCGTCGGCGTAAAACACTACTCCGGCACAATAACCGGCCGTGAAATGGTCGGCCTACTCCGGGAGCCTCTCAACCCGTACGACTCAAACGCCATCAAAGTTCTTAACACTCAATCCCTTCAAGTCGGTTATATCGAACGCTCCGTCGCCGCCGCTCTTTCGCCTCTCATCGACGCTTCACTCATTCACATTGAAGCCATCGTTCAAACTAACCCTCGCTCCAATAATAACAGTAGATTTCGTATCCCTTGTCAGATTCATGTTTTCGCTCATTTCTCTGCTTTTGATGTTGTTCATGACGCTTTTTCCGATTCACCGGTTCATTTCATTTCGCATTCGGATCCTTCTTTTACTCTTTCGAACGCCGCTGCTGTTAAAGAAACCCGCGCTGAATCCACAGCGACAACTAAAACCAGTAATAAAAACCTAGACCAAATCTTCAAACTCGCCCGTGAAAACCTAGCTTCTAAAAACCAAATTCATGAACCGTTAAACCCTCCTTCTAACATAATCAAATCAGAGCTTCTCCAACACCAAAAAGAAGCCCTAGGATGGCTTTTCCACCGCGAAAGTTCAGAGGATTTACCCCAGTTTTGGGAAGAGAAGGATGGTAGTTTCGTCAATGTGTTGACTAATTACCAAACCAACACACGACCGGAGCCACTCCGGGGAGGGATATTCGCGGACGGTATGGGATTAGGGAAGACTTTAACACTGCTTTCTTTGATTGCTTATGATAAAATGAAAATGAAAGGTGGAAAGAAAAGAGGTAGGAGTGTTGTAGAGACAAATGCTACATTGATTGTGTGTCCTCCTTCTGTTATTTCAACTTGGATAACTCAATTGGAAGAGCATACTAACCGTGGTGCGATGAAGGTTTACATGTATTATGGTGATAGGAGGACTCAAGATGCTGAAGAACTGCGAAAATATGATATTGTGCTGACTACTTATGCTACTTTGGGAGCTGAATTGCGTTGGCCGGATACCGCAGTGAAGAAATTGGGGTGGAGGAGAATTGTTTTGGATGAAGCACATATGATTAAGAATGTTAATGCTGGACAGAGTCAGGCTGTTATTGCTTTGAATGCTAAGAGGAGATGGGCTGTTACTGGAACACCTATTCAGAATGGTTCTTATGATTTGTTTTCTCTTATGGCATTTTTGCATTTTGAGCCTTTTTCAATCAAGAGTTATTGGCAAAGCTTGGTTCAACGTCCTCTTAATCAAGGCAAACAGACTGGGCTCAACCGATTGCAGGTTTTGATGGCGGCAATATCATTACGAAGAACAAAAGACACTGCATTGGTGGGGCTTCCACCTAAGATTGTAGAGACGTGTTATGTTGAACTTTCACGCGAAGAGCGTAAACTGTATGATGAGGTTAAAGAGGAAATAAGGTCGCTTGTGAACAATGACAGACTAGTGTATAGTTATTCTACTATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTGCTGATTTATCAATGTGCCCGTCGGATTTCAAGTCATGTCTATTTTCTTCAACTGAAATTGAAGATGTTTCAGAGAACCCTGAATTGCTGCAAACATTAATTGGGATGCTACAAGATTGTGAAGATTTTGATTGTCCAATATGTTTATCTCCCCCATCGGATGTTGTAATTACATGTTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTACAGCGCAGCAACTCTAGTTGTCCACTTTGTCGGCGCTCCCTTTCAGAATCTGACTTATTCTCAGTCCCCTCTCTCAAGACTGATACTACTGAACCATGTACACCAGATGTAATGTCATCCACAAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCAAGGGATCAAAATCCAGCTACCAAATCTGTTGTATTTTCACAATTCCGTAAGATGCTTCCATTGTTAGAAGAGCCTCTGAAAGCTGCTGGCTTTAAAACATTGCGTCTTGACGGGGCAATGAATGCTAAACAAAGGGCTCAAGTTATTGAACAATTTCAACTCTCAGAAGTAGATGAACCAATGATTCTTCTTGCAAGTCTAAGGGCTTCAAGTACAGGTATAAATCTAACGGCTGCCTCTAGAGTGTACTTAATGGAGCCGTGGTGGAACCCAGCAGTTGAAGAACAGGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAAGAAGTGAAGATTGTTAGACTGATAGCTAAAAATAGCATTGAAGAGAAAATATTAATGTTGCAAGAGAAGAAGAAAGAAATAACAAGCCGAGGATCTGGGAGGAGATCAAAGGATGTTGTTGGTATGGGCATAGAGGATCTCCGTTTCGTTTTAGGAGAATAG 2412 0.4221 MDSQEPFSQSETETYLAGFVMANIVGVKHYSGTITGREMVGLLREPLNPYDSNAIKVLNTQSLQVGYIERSVAAALSPLIDASLIHIEAIVQTNPRSNNNSRFRIPCQIHVFAHFSAFDVVHDAFSDSPVHFISHSDPSFTLSNAAAVKETRAESTATTKTSNKNLDQIFKLARENLASKNQIHEPLNPPSNIIKSELLQHQKEALGWLFHRESSEDLPQFWEEKDGSFVNVLTNYQTNTRPEPLRGGIFADGMGLGKTLTLLSLIAYDKMKMKGGKKRGRSVVETNATLIVCPPSVISTWITQLEEHTNRGAMKVYMYYGDRRTQDAEELRKYDIVLTTYATLGAELRWPDTAVKKLGWRRIVLDEAHMIKNVNAGQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQSLVQRPLNQGKQTGLNRLQVLMAAISLRRTKDTALVGLPPKIVETCYVELSREERKLYDEVKEEIRSLVNNDRLVYSYSTILSMILRLRQICADLSMCPSDFKSCLFSSTEIEDVSENPELLQTLIGMLQDCEDFDCPICLSPPSDVVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSESDLFSVPSLKTDTTEPCTPDVMSSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLPLLEEPLKAAGFKTLRLDGAMNAKQRAQVIEQFQLSEVDEPMILLASLRASSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKEITSRGSGRRSKDVVGMGIEDLRFVLGE* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1872 803 CDD SF2_C_SNF 629 758 - -
Psa3g1872 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 801 IPR027417 -
Psa3g1872 803 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 282 788 - -
Psa3g1872 803 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 7 269 - -
Psa3g1872 803 Gene3D - 8 130 - -
Psa3g1872 803 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 7 269 - -
Psa3g1872 803 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 282 788 - -
Psa3g1872 803 SMART ring_2 561 599 IPR001841 -
Psa3g1872 803 Pfam SNF2-related domain 201 521 IPR000330 GO:0005524|GO:0140658
Psa3g1872 803 ProSitePatterns Zinc finger RING-type signature. 576 585 IPR017907 -
Psa3g1872 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 611 IPR013083 -
Psa3g1872 803 Gene3D - 463 791 IPR027417 -
Psa3g1872 803 SUPERFAMILY RING/U-box 551 605 - -
Psa3g1872 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 453 IPR027417 -
Psa3g1872 803 SMART helicmild6 662 747 IPR001650 -
Psa3g1872 803 SMART HIRAN_2 17 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Psa3g1872 803 Pfam Helicase conserved C-terminal domain 631 747 IPR001650 -
Psa3g1872 803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 239 415 IPR014001 -
Psa3g1872 803 Coils Coil 760 780 - -
Psa3g1872 803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 634 798 IPR001650 -
Psa3g1872 803 SMART Ubox_2 558 621 IPR003613 GO:0004842|GO:0016567
Psa3g1872 803 Gene3D - 230 454 IPR038718 -
Psa3g1872 803 ProSiteProfiles Zinc finger RING-type profile. 561 600 IPR001841 -
Psa3g1872 803 Pfam HIRAN domain 20 109 IPR014905 GO:0003676|GO:0008270|GO:0016818
Psa3g1872 803 SMART ultradead3 194 422 IPR014001 -
Psa3g1872 803 Pfam Zinc finger, C3HC4 type (RING finger) 558 604 - -
Psa3g1872 803 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1872 Psa-Chr3 169998655 170004105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1872 3 797 RAD5 or RAD16-like Gene Family AT5G05130 58.551 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa3g1872 SNF2_N 4.4e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1872 K15711 - fve:101311093 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1872 3 169998655 170004105 Psa3g1872 3 169998655 170004105 ECH