Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1863 ATGCTTCACCAAAATATTGCAATGGAAAACAACTCCGAACTCTTTCAATTCATTGTTGCTAACAACCCTTCCTTCTTTGACTATTCTAATACTCCTATGATGCAACAAAGTTTATGTAGCTCTTCTGATAACAACAACAACAATAACAACTACTATCACCCTTTTGAAGTTTCTGAAATCACTGATACACCCTCCTCCCAACAAGATAGAGCTCTTGCTGCTTTGAAGAATCATAAGGAGGCTGAGAAGAGAAGGAGAGAGAGAATCAATTCTCATCTTGATCATCTTCGTACTCTTCTCCCTTGCAATTCAAAGACAGACAAAGCTTCACTTCTTGCAAAAGTTGTGGAACGAGTGAAAGAGTTAAAGCAGCAAACATCTGAGATGACAGAACTGGAAACAGTTCCATCGGAAACCGACGAAATAACGGTAATCTCCGGCGGGGGCGGAGACTTCAGCGGAGACGGAAGACTGATATTCAAAGCGTCGTTATGCTGCGAGGATCGGTCGGACCTAATCCCGGAGCTAATAGAAATTCTGAAATCTTTGCGGCTGAAAACAGTGAAAGCTGAAATTTGCACACTGGGAGGAAGAACTCGGAACGTTCTTGTTGTTGCTGGTGATAAAGAAGATAGTAGCATTGAGTCGATACATTTTCTTCAGAACTCGCTTAGGTCGTTGTTGGATAGGTCGAGTAGTTGTAATGATAGGTCAAAACGGCGTCGTGGGATGGATAGAAGAATGAATATGCCTTAA 756 0.4193 MLHQNIAMENNSELFQFIVANNPSFFDYSNTPMMQQSLCSSSDNNNNNNNYYHPFEVSEITDTPSSQQDRALAALKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVERVKELKQQTSEMTELETVPSETDEITVISGGGGDFSGDGRLIFKASLCCEDRSDLIPELIEILKSLRLKTVKAEICTLGGRTRNVLVVAGDKEDSSIESIHFLQNSLRSLLDRSSSCNDRSKRRRGMDRRMNMP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1863 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 134 IPR036638 GO:0046983
Psa3g1863 251 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Psa3g1863 251 Gene3D - 68 134 IPR036638 GO:0046983
Psa3g1863 251 PANTHER TRANSCRIPTION FACTOR BHLH30 10 249 IPR045847 GO:0003700|GO:0006355
Psa3g1863 251 SMART finulus 79 128 IPR011598 GO:0046983
Psa3g1863 251 Coils Coil 112 132 - -
Psa3g1863 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Psa3g1863 251 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 10 249 - -
Psa3g1863 251 CDD bHLH_AtAIG1_like 68 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1863 Psa-Chr3 168843547 168845227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1863 14 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 58.929 3.37e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g1863 HLH 6.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1863 - K22484 gmx:100802566 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1863 3 168843547 168845227 Psa3g1863 3 168843547 168845227 ECH