Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1861 ATGGGACTCTGTCATGGAAAACCAGTTGAAGCTTCACATACAGAAAGACAAATTTCAACCTCCGCAAACGATGAAATTCTTGAACTTCCACCACCACCTCTAGCAACCTCAATTCATCACGCATCCACTAAATCATCCTCAAAGTTTCCCTTTTTCAGTCCTAGTCCTTTACCCAGTTTCTTCAAACAATCACCGGCAAATTCGAATTCGAGTGTCACTTCCACTCCTCTTCGGATCTTTAAGCGGCCCTTTCCTCCTCCGTCTCCGGCCAAGCACATTCGGGCTCTGCTTGCTAAACGACATGGCTCCGTCAAGCCTAATGAGGCTTCGATACCGGAAGGGAGTGAGTGTGAAGTTGGGTTGGATAAGAGTTTTGGATTTTCGAAGCAGTTTGGGGTAAATTTTGAGCTTGGTCAAGAAGTGGGGCGTGGACATTTTGGGTATACTTGTTCTGCTAAGGGGAAAAAAGGAAGCTTTAAGGGTATTGATGCTGCTGTTAAAGTCATTCCTAAATCTAAGATGACGACAGCGATTGCGATAGAGGATGTAAGAAGAGAAGTGAAGATATTGCGAGCTCTGACTGGTCATAAGAATCTGGTACAATTCTATGAAGCCTATGAAGACGATGAAAATGTTTATGTAGTTATGGAATTATGCAAAGGAGGTGAGTTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAGGATGCTAGAGTTGTTTTAATTCAGATACTAAGTGTGGTAGCTTACTGTCATCTACAGGGCGTTGTCCACCGTGATCTCAAGCCAGAGAATTTTCTTTTCAGTTCTGAGGATGAAAATTCGACACTGAAGGCAATTGACTTTGGACTCTCTGATTATGTAAAGCCAGATGAGAGATTGAATGATATTGTTGGAAGTGCATATTATGTTGCCCCTGAAGTTTTGCATAGATCATATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATCCTGTTATGCGGGAGCCGACCTTTTTGGGCCAGGACAGAATCTGGCATATTTCGGACTGTACTTAAGGCGGATCCAAGTTTTGACGAAGCTCCTTGGCCTTCTTTATCGGATGATGCAAAAGATTTTGTAAAGAGGCTGCTGAATAAAGATTTTCGTAAAAGATTAACTGCGTCTCAGGCTCTCAGTCATCCATGGCTGGTAAATCACTTAGAGGATAGAAAGATTCCGTTTGATATGGTAATCCACAAGAACATCAAAGCTTACATCGGCTCATCTTCTTTACGCAAATCAGCATTAGGGGCTATTGCAAAGACATTGACATTAGTGCAGCTAGCATATCTCAAAGAACAATTTACTATTTTAGGGCCGAATAAAAGTGGGCTCATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACTGATGCCTCGAAGGATTCGCGGGTCTTAGATTATGTGAACATGGTTAGCTCAATCCAATATCGAAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTGGAGGGAATGGAAGTTTGGGAGCGACATGCCAGACGTGCCTACGATCTTTTTGAGAAGGATGGAAATAGACCAATTATGATCGAAGAACTTGCCTCGGAACTTGGACTTGGCCCCTCGGTACCTATTCATACGGTACTCCAAGATTGGATAAGACACTTCGACGGAAAGCTTAGTTTCTTAGGGTTTGTCAGACTCCTGCACGGAGTTTCAACTCGCGGACTTCACAAGGCTTGA 1770 0.4294 MGLCHGKPVEASHTERQISTSANDEILELPPPPLATSIHHASTKSSSKFPFFSPSPLPSFFKQSPANSNSSVTSTPLRIFKRPFPPPSPAKHIRALLAKRHGSVKPNEASIPEGSECEVGLDKSFGFSKQFGVNFELGQEVGRGHFGYTCSAKGKKGSFKGIDAAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDENVYVVMELCKGGELLDKILSRGGKYSEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFSSEDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRTVLKADPSFDEAPWPSLSDDAKDFVKRLLNKDFRKRLTASQALSHPWLVNHLEDRKIPFDMVIHKNIKAYIGSSSLRKSALGAIAKTLTLVQLAYLKEQFTILGPNKSGLISMQNFKTAILRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMEVWERHARRAYDLFEKDGNRPIMIEELASELGLGPSVPIHTVLQDWIRHFDGKLSFLGFVRLLHGVSTRGLHKA* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1861 589 Gene3D - 438 507 - -
Psa3g1861 589 SUPERFAMILY Protein kinase-like (PK-like) 134 412 IPR011009 -
Psa3g1861 589 SUPERFAMILY EF-hand 427 580 IPR011992 -
Psa3g1861 589 PANTHER CDPK-RELATED KINASE 1 37 584 - -
Psa3g1861 589 Pfam Protein kinase domain 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1861 589 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Psa3g1861 589 Gene3D - 419 577 - -
Psa3g1861 589 Gene3D Phosphorylase Kinase; domain 1 137 224 - -
Psa3g1861 589 SMART serkin_6 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1861 589 CDD STKc_CAMK 134 396 - -
Psa3g1861 589 ProSiteProfiles Protein kinase domain profile. 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1861 589 Gene3D Transferase(Phosphotransferase) domain 1 225 418 - -
Psa3g1861 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Psa3g1861 589 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1861 Psa-Chr3 168777631 168782959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1861 44 586 EF-hand Containing Proteins AT3G50530 68.621 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa3g1861 Pkinase 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1861 - - gmx:100783262 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1861 3 168777631 168782959 Psa3g1861 3 168777631 168782959 ECH