Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1857 ATGCCTTACCTAGTCCGCGAGAATCTCTTCATCAGCAACATCAACGACGCTGCTCAGATTCTCCAAAACGCCGCCGTTCAATACAACAACATCACCCACATCCTCTCCGTTCTCAGCTCCGCTTCAATCTCCTTCTTCTCCGAATGGCGTTCCACTATCTCCATCCCCGTCAAAGAGATTTCCAAACTTCACGTCTCCGACCTCCCTACCGCCGCCAAGTCCGCTCTCTCGCCGGACAAACTCCTCTACTCACTCGAGTATGCCGGTAAAGACCTCAAGCTTGTAAGGATGGCGGTTCCTCTTAAGGATACAGAGAGCGAGAATTTGTTGGATTACCTCGAAGTTTGCATCGATTTCATTGATCGGAGTAGGAAGGAAGGTTCCGTTTTGGTTCACTGTTTTGCAGGTGTTTCTAGAAGTGCTTCGGTTATTACTGCTTATTTGATGAGAAGCGAGAATCTGTCACTAGAAGATGCACTTGAATCGTTAAAGCAGAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTAGAGCAGTTGAAAATGTTTGAAGAGATGGGTTTTAAGGTTGATCAGTCTAGCCCTATATACAAGCGTTTTCGTCTAAAAGTACTAGGTGAGAATCATTTCGCAGGGTCAAGGATAGACAGTTCTAAACTCGGTGCAGACCCTGGCATGCCTGTTGAAACATCTTCAGAGCCACAAGAAGCTACTAAAGTAGATAATAACCGTAGCCCTACATACCGTTGTAAGAAGTGCCGTCGGATTGTTGCATTGCAAGAACATGTTGTAGACCATATTCCTGGCGAGGGTGAGGCATCCTTTGGTTGGCACAAAAGGAGAAGTGGCAATCCTTTTAACAAGTCTAATGAATCTGAGTGTTCGTCCATATTTATTGAGCCTCTACGATGGATGAAAGATGTCGAGGAAGGCGCGTTGGAAGGAAAGCTGTCATGTGCTCATTGTGATGCCCGTTTGGGGTACTTCAATTGGTCAGGCATACAATGCAGCTGTGGAAGCTGGATAACCCCAGCTTTCCAACTTCACCAAAGCCGGGTAGATATAAGCTCTGTGTAA 1077 0.4615 MPYLVRENLFISNINDAAQILQNAAVQYNNITHILSVLSSASISFFSEWRSTISIPVKEISKLHVSDLPTAAKSALSPDKLLYSLEYAGKDLKLVRMAVPLKDTESENLLDYLEVCIDFIDRSRKEGSVLVHCFAGVSRSASVITAYLMRSENLSLEDALESLKQSCEFVCPNDGFLEQLKMFEEMGFKVDQSSPIYKRFRLKVLGENHFAGSRIDSSKLGADPGMPVETSSEPQEATKVDNNRSPTYRCKKCRRIVALQEHVVDHIPGEGEASFGWHKRRSGNPFNKSNESECSSIFIEPLRWMKDVEEGALEGKLSCAHCDARLGYFNWSGIQCSCGSWITPAFQLHQSRVDISSV* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1857 358 PIRSF DUSP12 3 50 IPR016278 GO:0006470|GO:0008138
Psa3g1857 358 PIRSF DUSP12 73 358 IPR016278 GO:0006470|GO:0008138
Psa3g1857 358 Pfam Dual specificity phosphatase, catalytic domain 93 185 IPR000340 GO:0008138|GO:0016311
Psa3g1857 358 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 110 165 IPR000387 GO:0016311|GO:0016791
Psa3g1857 358 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 354 - -
Psa3g1857 358 CDD DSP_DUSP12 4 191 - -
Psa3g1857 358 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 189 IPR020422 GO:0006470|GO:0008138
Psa3g1857 358 MobiDBLite consensus disorder prediction 221 241 - -
Psa3g1857 358 SMART dsp_5 1 186 IPR020422 GO:0006470|GO:0008138
Psa3g1857 358 ProSitePatterns Tyrosine specific protein phosphatases active site. 131 141 IPR016130 GO:0016311|GO:0016791
Psa3g1857 358 Gene3D Protein tyrosine phosphatase superfamily 4 206 IPR029021 -
Psa3g1857 358 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 189 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1857 Psa-Chr3 168602135 168606324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1857 94 185 Protein tyrosine phosphatase (PTP) family AT3G06110 35.484 3.44e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1857 K14819 - gmx:100804683 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1857 3 168602135 168606324 Psa3g1857 3 168602135 168606324 ECH