Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1838 ATGGGCAGTAGGGGAAGAGCTGCTGAGGATACTAACAAGATTGCCAACGGGATGCCGAGTTACGCGCCTCCATTGCCGCCGCCTAATTCCATGGGCATGGAAGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTCGAGGATGCCATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTCTAAGTAAGTCAATTGCAAACTCGGATATAAACCTCTCTGCTGCAATTGCTGGTTCTCAGACATTGCAACAACAAAAAGACTCGCAGCCGAATTTGGCTTCAACATCTGGCGGCCATCGTGAGAACTGGGGAGAGTCCAACATGGGTGATGGAAGCCCTGATACTTCAACAGATGATACAGAAGACAAAAATCAAATGCCTGAAAGAGGAGAATCAAGTGAGAGATCGAAAGATAAATCAGATCAAAAGACGCTAAGACGGCTAGCTCAAAATCGTGAAGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAATTGGAGCAAGAGTTACAGCGAGCACGCCAGCAGGGGATTTTTATTTCAAGCACGGGAGAGCAGACTCATTCGATGAGTGGAAACGGCGCAATGGCGTTTGATGCAGAATATGCACGATGGTTAGAAGAGCATAATAGGCAAACCAATGAACTAAGGGCTGCAATAAATTCTCATGCGGGGGATATTGAACTCCGTACCATTGTGGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCCGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTTCTCAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACCGAGCAACAATTAATGGGCATCTACAACTTGCAACAATCATCTCAACAGGCGGAAGATGCTCTCTCCCAAGGAATGGATGCTTTGCAGCAATCACTTTCCGAGACTTTGGCTAATGGTTCGCCCAACCCTTCGGGTTCTTCTGGAAATGTGGCTAACTACATGGGCCAAATGGCCATGGCCATGGGAAAGCTCGGTACTCTCGAGGGCTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTGCAACAGATGCTTCGGATATTAACAACCAGACAATCAGCTCGAGCTCTTCTTGCAATAAGCGATTATTTCTCCCGGCTACGAGCCTTGAGTTCTCTATGGCTTGCGCGACCAAGGGAGTAA 1368 0.4598 MGSRGRAAEDTNKIANGMPSYAPPLPPPNSMGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKSIANSDINLSAAIAGSQTLQQQKDSQPNLASTSGGHRENWGESNMGDGSPDTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1838 455 MobiDBLite consensus disorder prediction 108 141 - -
Psa3g1838 455 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 57 455 - -
Psa3g1838 455 PANTHER TRANSCRIPTION FACTOR TGA9 57 455 - -
Psa3g1838 455 Coils Coil 189 216 - -
Psa3g1838 455 Pfam Basic region leucine zipper 166 212 IPR004827 GO:0003700|GO:0006355
Psa3g1838 455 CDD bZIP_HBP1b-like 170 222 - -
Psa3g1838 455 Pfam Seed dormancy control 253 328 IPR025422 GO:0006351|GO:0043565
Psa3g1838 455 SMART brlzneu 166 229 IPR004827 GO:0003700|GO:0006355
Psa3g1838 455 ProSiteProfiles DOG1 domain profile. 235 452 IPR025422 GO:0006351|GO:0043565
Psa3g1838 455 MobiDBLite consensus disorder prediction 143 172 - -
Psa3g1838 455 MobiDBLite consensus disorder prediction 108 172 - -
Psa3g1838 455 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 173 188 IPR004827 GO:0003700|GO:0006355
Psa3g1838 455 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 168 212 IPR004827 GO:0003700|GO:0006355
Psa3g1838 455 Gene3D - 169 221 - -
Psa3g1838 455 MobiDBLite consensus disorder prediction 1 39 - -
Psa3g1838 455 SUPERFAMILY Leucine zipper domain 170 213 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1838 Psa-Chr3 166835327 166840064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1838 135 455 bZIP Transcription Factor Family AT3G12250 73.716 2.30e-169 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa3g1838 DOG1 2.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1838 K14431 - gmx:778136 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1838 3 166835327 166840064 Psa3g1838 3 166835327 166840064 ECH