Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1827 ATGGTTCCCGTGAAGAAAAATCAGGTTCAGCTACCGTCGTTGGTTAGGACTTCGAGAGGGCGAGTTCAGGTTCTTCCTTCTCGTTTTAACGACTCTGTCATTAATGATTGGAAGAAGGATGAAAAAATTAATTTGCGTGATTGTGAAGTGGAATTTGAATGCAACAAGGACAGGGTTGTAGTACCCAAAACCTGCAATAATGATGTTAAAAAAGGCGTAACAATGGGAAAGTTTGGTTATAAGCAACGCAGGTATTCGGCACTGCATGGAGAGGGTGATGTTACCCTTGCAACTATGAGTTTTCCAAATGAATCCATGCCTGATTCTCCTCAGAGAAAGATTGGAAGGGGAAAGATTGAGATCAAGAGGATTGAAAAAACAATAAATCGCCAAGTTACCTTCTGCAAACGTAGAAATGGCTTGCTTAAGAAGGCATATGAGTTATCCGTGCTTTGCGATGCAGAAGTTGCTCTTATAGTCTTTTAG 486 0.4095 MVPVKKNQVQLPSLVRTSRGRVQVLPSRFNDSVINDWKKDEKINLRDCEVEFECNKDRVVVPKTCNNDVKKGVTMGKFGYKQRRYSALHGEGDVTLATMSFPNESMPDSPQRKIGRGKIEIKRIEKTINRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1827 161 ProSiteProfiles MADS-box domain profile. 114 161 IPR002100 GO:0003677|GO:0046983
Psa3g1827 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 123 161 IPR002100 GO:0003677|GO:0046983
Psa3g1827 161 PRINTS MADS domain signature 116 136 IPR002100 GO:0003677|GO:0046983
Psa3g1827 161 PRINTS MADS domain signature 136 151 IPR002100 GO:0003677|GO:0046983
Psa3g1827 161 PRINTS MADS domain signature 151 161 IPR002100 GO:0003677|GO:0046983
Psa3g1827 161 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 110 161 - -
Psa3g1827 161 CDD MADS_MEF2_like 115 161 IPR033896 GO:0000977|GO:0045944
Psa3g1827 161 Gene3D - 127 161 IPR036879 GO:0003677|GO:0046983
Psa3g1827 161 SUPERFAMILY SRF-like 115 161 IPR036879 GO:0003677|GO:0046983
Psa3g1827 161 PANTHER MADS BOX PROTEIN 110 161 - -
Psa3g1827 161 SMART madsneu2 114 161 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1827 Psa-Chr3 165294528 165295275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1827 112 161 MADS-box Gene Family AT2G42830 90.000 1.98e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa3g1827 SRF-TF 4.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1827 K09264 - gmx:100811337 102.449