Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1826 ATGGTTCCCGTGAAGAAAAATCAGGTTCAGCTACCGCCGTTGGTTAGGACTTCGAGAGGGCGAGTTCAGGACGGGGTAGTAGTACCCAAAACCTGCAATAATGATGTTAAAAAAGGCGTAACAATGGGAAAGTTTGGTTATAAGCAAAACAGGTATTCGGCACTGCGTGGAGAGGGTGATGTTACCAGAAAGATTGGAAGGGGAAAGATTGAGATCAAGAGGATTGAAAAAACAACAAATCTCCAAGTTACCTTCTGCAAACGTAGAAATGGCTTGCTTAAGAAGGCATATGAGTTATTTGTGCTTTGCGATGCAGAAGTTGCTCTTATAGTTTTTTCGACTCGTGGCCGTCTCTATGAATATGAAACTAAATGTGTGAAAGCTTCTATTGAGAGGTATAATAAAGCATGTTCTGATACTTCTGGTGCTAAATCAGCTTTTGAGACTAATGCTCAATGTTATCAGCAAGAAGCCGCGAAACTGCGAGTGCAAATCAGTAATTTGCATAATCATAACAGGCAAATGATGGGTGAAGCCTTGAGCAATATGAATGCGGGCAAAATGAGACTGATGAGCATGTGTGCTCACAGTTTTGAGAAGCTCTCCGAAATCTGTCAAAGGAGAATTGTTCCTTTCTATAGGGGTCTTAATGCATTTCAACAGGCTCAGTCATTTTTCAACCGCTGTCACCCAAAATTCGGGTTGAAGTGTTTCTGCTACGGTACCACCTGA 732 0.4194 MVPVKKNQVQLPPLVRTSRGRVQDGVVVPKTCNNDVKKGVTMGKFGYKQNRYSALRGEGDVTRKIGRGKIEIKRIEKTTNLQVTFCKRRNGLLKKAYELFVLCDAEVALIVFSTRGRLYEYETKCVKASIERYNKACSDTSGAKSAFETNAQCYQQEAAKLRVQISNLHNHNRQMMGEALSNMNAGKMRLMSMCAHSFEKLSEICQRRIVPFYRGLNAFQQAQSFFNRCHPKFGLKCFCYGTT* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1826 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 66 187 - -
Psa3g1826 243 ProSiteProfiles MADS-box domain profile. 65 125 IPR002100 GO:0003677|GO:0046983
Psa3g1826 243 SUPERFAMILY SRF-like 66 137 IPR036879 GO:0003677|GO:0046983
Psa3g1826 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 66 187 - -
Psa3g1826 243 PRINTS MADS domain signature 67 87 IPR002100 GO:0003677|GO:0046983
Psa3g1826 243 PRINTS MADS domain signature 87 102 IPR002100 GO:0003677|GO:0046983
Psa3g1826 243 PRINTS MADS domain signature 102 123 IPR002100 GO:0003677|GO:0046983
Psa3g1826 243 Coils Coil 144 171 - -
Psa3g1826 243 Gene3D - 78 140 IPR036879 GO:0003677|GO:0046983
Psa3g1826 243 CDD MADS_MEF2_like 66 139 IPR033896 GO:0000977|GO:0045944
Psa3g1826 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 74 121 IPR002100 GO:0003677|GO:0046983
Psa3g1826 243 SMART madsneu2 65 124 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1826 Psa-Chr3 165268848 165270316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1826 58 189 MADS-box Gene Family AT3G58780 62.879 1.59e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa3g1826 SRF-TF 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1826 K09264 - gmx:100776263 179.874