Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1811 TCCCTAAGATCTCTTTCTCTTGATTACTTAAATCTTCTCATCAACGGACAAGCCTTCAGCGACGTCGTTTTCAGCGTCGAAGGCCGTTTAGTCCACGCTCACAGATGCATCTTAGCAGCAAGGAGTCTCTTCTTCAGAAAATTCTTCTGTGGGCCAGACCCGCCTTCCGGACTCGACCCGTCAGGCAACCGAGTCAACTCATCAACAAGGTCCGGTGTTATACCGGTGAACTCAGTGGGCTACGAGGTTTTCTTGCTGATGCTTCAGTTTCTCTACAGTGGTCAAGTTTCTATTGTTCCGCAGAAACATGAACCTAGGCCTAATTGCGGCGACCGTGGTTGTTGGCATACGCATTGTACCTCGGCCGTTGATCTCGCTCTTGATACTCTCTCCGCCGCGAGATACTTTGGGGTTGAACAGCTTGCATTGCTCACTCAGAAACAACTTGCTAGCATGGTGGAAAAAGCTTCTATTGAAGATGTAATGAAAGTGCTACTAGCATCAAGAAAACAAGACATGCATCAACTATGGACAACATGTTCTCACCTCGTCGCGAAATCTGGTCTTCCGCCGGAAGTGCTGGCGAAGCATCTTCCGATAGACATCATAGCGAAAATCGAAGAGCTTCGAATGAAATCATCCTTATCACGCCGCTCCTTAATCCCTCACCACCACCACAACCCTCACCATCACCACGATCATCTCACCGCTGCAGCAGACCTCGAAGACCAAAAGATCCGTCGGATGAGACGTGCCCTCGACTCCTCGGACGTGGAGCTAGTTAAACTCATGGTAATGGGAGAAGGCCTTAACCTCGACGAAGCATTAGCGTTACCTTACGCGGTTGAGAGTTGCAGTAGAGAAGTGGTGAAAGCCTTGTTAGAACTCGGTGCAGCTGATGTGAATTTCCCGGCCGGTCCAACCGGTAAAACCCCGCTTCACATTGCTGCCGAGATGGTCTCGCCGGACATGGTGGCCGTGCTTCTCGACCACCACGCTGACCCGAATGTAAGAACAGTCGACGGCGTTACACCTTTAGACATTCTGAGAACCCTAACCTCAGACTTTCTCTTCAAAGGCGCTGTCCCTGGATTAACTCACATAGAACCAAACAAACTAAGGCTGTGTTTGGAGCTTGTTCAATCTGCAGCTCTTGTCATGTCAAGAGAAGAAGGTAACAACAACAATAATGCTAATAACAACAACACAGGATCTTCAGCAACAAACATGTACCCTCACAATCATATGAATGAAGAACATCATAGTCATCACAACAACAACAGTAACATGGATTCAAGGTTGGTGTATCTTAACCTTGGTGCTAATACTCAAATGAGTACTTCAAGGTTGGATTCTGGTGATGATGATCATAATAGTAATCAAAGGGAAGCTATGAATCCATCCATGTATCATCATCATCATTCTCATGACTACTAA 1437 0.4711 SLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPSGNRVNSSTRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGDRGCWHTHCTSAVDLALDTLSAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRMKSSLSRRSLIPHHHHNPHHHHDHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVESCSREVVKALLELGAADVNFPAGPTGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNNNANNNNTGSSATNMYPHNHMNEEHHSHHNNNSNMDSRLVYLNLGANTQMSTSRLDSGDDDHNSNQREAMNPSMYHHHHSHDY* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1811 478 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 474 IPR044284 GO:0099402
Psa3g1811 478 PANTHER REGULATORY PROTEIN NPR5 1 474 - -
Psa3g1811 478 SMART BTB_4 20 153 IPR000210 GO:0005515
Psa3g1811 478 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Psa3g1811 478 Gene3D - 232 356 IPR036770 -
Psa3g1811 478 CDD BTB_POZ_NPR_plant 3 153 - -
Psa3g1811 478 ProSiteProfiles BTB domain profile. 20 100 IPR000210 GO:0005515
Psa3g1811 478 Pfam BTB/POZ domain 11 101 IPR000210 GO:0005515
Psa3g1811 478 SUPERFAMILY POZ domain 5 151 IPR011333 -
Psa3g1811 478 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
Psa3g1811 478 Pfam Domain of unknown function (DUF3420) 188 250 IPR024228 -
Psa3g1811 478 SMART ANK_2a 308 337 IPR002110 GO:0005515
Psa3g1811 478 SMART ANK_2a 273 303 IPR002110 GO:0005515
Psa3g1811 478 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Psa3g1811 478 Gene3D Potassium Channel Kv1.1; Chain A 3 186 IPR011333 -
Psa3g1811 478 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1811 Psa-Chr3 160907829 160911118 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa3g1811 BTB 9.3e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1811 K14508 - gmx:100816086 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1811 3 160907829 160911118 Psa3g1811 3 160907829 160911118 ECH