Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1787 ATGGTTGCATTTTGCTCTCCTGAGTTCTCATACTCAAACATGGGATGGCTCTTACAAGAGTTACAGCCTGCACAGTCCTTAAATATTATCCACAAGGACAAGAACTATGCAACTAATTTAGAGTACTCTTTACCTCAATATCATCAATTCTCTTCACTCAAGCAACAACATGTTGAGATTGAAACGCCACCATCACCCCCTAAGCTTATGGTGAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGCCGCAAAAAGGTCAATACCTTGATTTCTTCACTTCGCTCACTTCTTCCAGATGAAGATCAAACGAAAAAGATAAGTATTCCGGTAACAATTTCAAGTGTGTTAAAATACATACCGGAATTACAAAAGCAGGTGGAAGGATTAACTAAGAAAAAGGAAGATCTTCTATCAAGAATTTCTAGGCAAGAATATGCAGTCAACAAAGAATCACAAAGGAAAACAATTCCAAGTTATAATTCTTGTTTTGTGGTTTCAACAAGTAGGCTTAATGATAGTGAGCTTGTTGTTCATATCTCATCTTATGAGACTTACAAGATTCCATTATCTGAGATCTTGATGTGTTTAGAAAATAATGGACTTTTTCTACTAAATTCTTCTTCTTCTAAAACCTTTGGAGGGAGACTCTTCTACAACTTGCATTTTCAGGTGGATGGAACTCAGAGATTAGAGTCTGATGATCTTATTCAGAAGGTTTTGTCAGTATATGAGAGGCAGCTAAGTAATCAAGTAGTGTTGGGAGATAAAGATCACATGATCAGGAGTGTTATGATATATTAA 804 0.3632 MVAFCSPEFSYSNMGWLLQELQPAQSLNIIHKDKNYATNLEYSLPQYHQFSSLKQQHVEIETPPSPPKLMVKKLNHNASERDRRKKVNTLISSLRSLLPDEDQTKKISIPVTISSVLKYIPELQKQVEGLTKKKEDLLSRISRQEYAVNKESQRKTIPSYNSCFVVSTSRLNDSELVVHISSYETYKIPLSEILMCLENNGLFLLNSSSSKTFGGRLFYNLHFQVDGTQRLESDDLIQKVLSVYERQLSNQVVLGDKDHMIRSVMIY* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1787 267 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 246 - -
Psa3g1787 267 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Psa3g1787 267 SMART finulus 77 129 IPR011598 GO:0046983
Psa3g1787 267 Coils Coil 120 140 - -
Psa3g1787 267 Gene3D - 67 155 IPR036638 GO:0046983
Psa3g1787 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 142 IPR036638 GO:0046983
Psa3g1787 267 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 246 IPR015660 GO:0003700|GO:0006357
Psa3g1787 267 CDD bHLH_AtORG2_like 72 144 - -
Psa3g1787 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1787 Psa-Chr3 158562126 158564065 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1787 7 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.629 2.02e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g1787 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1787 - - gmx:100803424 272.707