Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1739 ATGGATCACAGAACGAAACCTAACAATTCGTTCTCATACTCCACTCTCTTCAATCTCCAGTCTTTGATCAACTTTGAACTTCCAGAACAAGATGATGATTTTGAATATTATGGGAATAGTAGTCAGGATGAGAGCAGAAACAGCCGAGGTGGGGCAGTTGCAAGTCATAGTAATGGGAATGTGTGTGGGAGGGATGTGAATTTGTTGAAGAAGAGGAGTCGGTCTGGGAACAGTGATAACGAGGAAAAAAGTGGTTTTCACGGGACACATACGATGGAAGAACGATACCGATCAATGCTTGGAGACCATATTAAGAAATACCAGAGGAGGTTTAAGGGTACCAGGAATAGTCCTGACCCGAATCAGGTTGTTGTTCCATTTGCAAAAGCTAACAATGGATTAAAAGCTCACAAGCCGGGGAATGAGCGTAGGAGAGGATTGCTCGATGAAGAGACTATGTCTGAGTGGATGAATGGTTCAAATGCTCAGAAAGCCGGGAACATCCTTGATACAGATTTCGTACAGCAACATGGTCCTGACAGGGTTATGTATGAACCTGCATCTGTGAATATTGGGGACGGTGTGACTTATAAGATTCCTCCAATTTATGATAAGTTGGCTGCAATGGTGAACCTTCCAAGTTTCTCAGATATCCATGTTGAGGACTTCTACCTTAAGGGTACATTGGATTTAGGCTCCTTGGCTGAAATGATGGCATCTGATAAAAAGTTTGGGAATAGAAACCGAGCAGGCATGGGGGAAACTGTATCCCAATATGAATCACTTCAAGCACGGCTAAAGGACACACCAGTTTCTAATTCAGCTCACAAGTTCAGTCTGAAAATATCTGATGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCTGGAAGCATAAAGCGGTCTATTTTATCCGAGGGGGGTATATTGCAGGTTTACTATGTTAAGGTTTTGGAGAAAGGAGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGGTAAAGAAAGACCCTGCGTTAATAGAGAAAGAGGAAATGGATAAGTTTGGAAAGATTTGGGTAAATATTGTTAGAAGAGACTTACCAAGGCATCATAGGAATTTTACCACTTTTCATCGAAAGCAGCTCGTTGATGCTAAGAGGGCCGCAGATAACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGAACTGCTAGCATGCGATCCCGAAAACTAGCTAGAGACATGTTACTATTCTGGAAACGAATAGATAAGGAGATGTTAGAAGTGAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGCGAGCAGGAGATTCGAGAAGCCAAGAGGCAGCAGCAAAGGCTAAATTTTCTAATACAACAGACTGAGCTATACAGTCACTTTATGCAGAACAAGTCAATATCTTCAGAAGCTCTATCCATGGCAGATGAAAATACAAATGATGAAAATGCACTGATCAACTCTTCAGCTGCTGGTCGTAATGAGGAGGAAGATCCCGAAGAGGCTGAATTGAGGAAGGAAGCTTTGAAAGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTAACAAGTGCTTTTGACAGTGAATGCTTGAGGCTGCGCCAGGCTGGTGAATCTGATTCACTTCAACCAGAAGTTTCTGGAGCGAGTAATATTGACTTGAAAACCCCCTCCACCATGCCCGTGGCATCGACAGTTCGGACACCTGAATTATTTAATGGCTGTCTCAAAGATTATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTTTTAGCTCATTTAGCTGAGGAGAAAAACATATGGGGACCTTTTTTGGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTGAAAATACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATGAACCCAAAGGATCTTTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCTCTGATGAGAAGTATTTCCGACGTGTGAAATGGCAGTATATGGTTTTAGACGAAGCTCAGGCAATTAAAAGTTCCAACAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACCGGTACGCCCGTTCAGAATAATATGGCCGAGTTATGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTAAATGAGCACCAACTTAATCGTTTGCATTCAATTATAAAGCCTTTCATGCTTCGGCGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTAGCAAAACTGAAGTGACCGTGCACTGCAAGTTAAGTTCTCGGCAACAAGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGCTGTTTGATAGTAATCGTGGACAGCTCAACGAGAAGAAAATCTTGAATTTAATGAACATTGTTATTCAACTGAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAAGCACATACCTTTACTTTGGAAAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGAGAGTTAGAGGATGTATATTATTCGGGTGGTCACAACCCCATCTCATATGAGATACCTAAACTTGTCTATCAAGAAATTTTGCGGAGTTCTGTAACCCTCAGTTCAGATGTTGGTCATGGTATCTGCAGAGAATCTTTTCAGAAGTATTTTAATATATTTAGACCAGAAAACATTTATAAATCTGTCTTCACAGAAGATATGCATGTTAAAAGTGGAACCTTTGGGTTTACCCATTTGATGGGTTTGTCTCCTCAAGAGGTGACATTTCTGGTTACTGGTTCTTTTATGGAGCGACTGTTATTTTCTATGATGAGATGGGAACAAAAATTCAGCAATGAAGTTGTAGACTTTCTTACGGAGACCATAATTGATGATCCGGAATGTAGCTACCTTGAAGAAGGAAAAGTGAGAACTGTTACAAGAATGTTGTTGGTACCAACGAGATCTGAGACTAAGTTTCTTCAAAACAGATTGCCAACGGGACTCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCACATCAGGAGAGGATTATATCAAATGCAAGGCTTCTCTACTCAGCTTACACATATATTCCAAAAAGTAGAGCGCCCCCAATTGGTGCTCACTGCTCTGATAGGAACTTCTACTATAAAATGATTGAGGAACTACATGATCCATGGGTTAAGAGGATGTTTGTGGGATTTGCCCGTACGTCTGATTGTAATGGGCCTAGAAAGCCAGATGGTTCTCATCATTTAATTCAAGAAATTGATTCTGAACAACATGTCTGTAAACCTGCTCTTCAGTTAACACACAGTATTTTTGGGTCTTCTCCACCTATGCGAAACTTTGACCCAGCAAAATTGCTTACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCAGGAAATCATCGCGTTCTCTTGTTTGCTCAGATGACCAAGATGCTAAATATTTTGGAGGACTATATGAACTACAGAAAATATAAGTATTTTAGACTTGACGGATCGACATCTATTCAGGACCGTAGAGACATGGTCAGAGACTTTCAGCACAGGGCTGATATTTTCGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATTAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGCTTGGGTCAAACAAAAGATGTTACTGTCTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTCAGAGCTAGCCAGAAAAGTACTGTACAGAATCTTGTCATGACCGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTTAAAACTATAACTGTCCAGGGTAGGGATAAGCAAAAGAAAAAACCTATGAAGGGTATTTTGGTAAATGAAGATGGTGACGCATCTCTGGAAGATGTATCAAACCCTGTAGCCATGGGTACAACAGATTATGATCTTGCCGTAGACCCAGAGGGATCAAAATCCAGTAATAAAAAGAGAAAAACTGTTTCAGATAAGAAAACTTTGAGACCAAAGAATTCACAAAAGACTATTGAATTTGATACCTCACCTAGGGACAACGAATTGGATGATGTCCACATAAATACTGATCCAGTCGTTCAGAGACCCAAGAGACCAAAGAGAACAAAGAAGAACGTGAATGAAATGTTTGAAGAGACTCTTACCGGGTCAGCTACCAAGGTCCCAGAGCAGATCCAATTTCAACCTCCACGTGATGGAGGTTCCAAAATAGAATCAGGTCAAGACACCTAA 4587 0.4125 MDHRTKPNNSFSYSTLFNLQSLINFELPEQDDDFEYYGNSSQDESRNSRGGAVASHSNGNVCGRDVNLLKKRSRSGNSDNEEKSGFHGTHTMEERYRSMLGDHIKKYQRRFKGTRNSPDPNQVVVPFAKANNGLKAHKPGNERRRGLLDEETMSEWMNGSNAQKAGNILDTDFVQQHGPDRVMYEPASVNIGDGVTYKIPPIYDKLAAMVNLPSFSDIHVEDFYLKGTLDLGSLAEMMASDKKFGNRNRAGMGETVSQYESLQARLKDTPVSNSAHKFSLKISDADLNSSIPEGAAGSIKRSILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMDKFGKIWVNIVRRDLPRHHRNFTTFHRKQLVDAKRAADNCQREVKMKVSRSLKWTRTASMRSRKLARDMLLFWKRIDKEMLEVRKREEKEAAEALRREQEIREAKRQQQRLNFLIQQTELYSHFMQNKSISSEALSMADENTNDENALINSSAAGRNEEEDPEEAELRKEALKAAQEAVSKQKMLTSAFDSECLRLRQAGESDSLQPEVSGASNIDLKTPSTMPVASTVRTPELFNGCLKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKILPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVVSELTSKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGKIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEILRSSVTLSSDVGHGICRESFQKYFNIFRPENIYKSVFTEDMHVKSGTFGFTHLMGLSPQEVTFLVTGSFMERLLFSMMRWEQKFSNEVVDFLTETIIDDPECSYLEEGKVRTVTRMLLVPTRSETKFLQNRLPTGLSHAPFEALVVPHQERIISNARLLYSAYTYIPKSRAPPIGAHCSDRNFYYKMIEELHDPWVKRMFVGFARTSDCNGPRKPDGSHHLIQEIDSEQHVCKPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSTSIQDRRDMVRDFQHRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKTITVQGRDKQKKKPMKGILVNEDGDASLEDVSNPVAMGTTDYDLAVDPEGSKSSNKKRKTVSDKKTLRPKNSQKTIEFDTSPRDNELDDVHINTDPVVQRPKRPKRTKKNVNEMFEETLTGSATKVPEQIQFQPPRDGGSKIESGQDT* 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1739 1528 MobiDBLite consensus disorder prediction 1494 1509 - -
Psa3g1739 1528 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Psa3g1739 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 816 IPR027417 -
Psa3g1739 1528 MobiDBLite consensus disorder prediction 38 92 - -
Psa3g1739 1528 MobiDBLite consensus disorder prediction 67 92 - -
Psa3g1739 1528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1206 1356 IPR001650 -
Psa3g1739 1528 MobiDBLite consensus disorder prediction 1445 1481 - -
Psa3g1739 1528 Pfam Helicase conserved C-terminal domain 1206 1315 IPR001650 -
Psa3g1739 1528 CDD SF2_C_SNF 1194 1326 - -
Psa3g1739 1528 SMART helicmild6 1232 1315 IPR001650 -
Psa3g1739 1528 MobiDBLite consensus disorder prediction 40 55 - -
Psa3g1739 1528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 771 IPR014001 -
Psa3g1739 1528 Pfam SNF2-related domain 603 890 IPR000330 GO:0005524|GO:0140658
Psa3g1739 1528 Gene3D - 1147 1412 IPR027417 -
Psa3g1739 1528 MobiDBLite consensus disorder prediction 1424 1528 - -
Psa3g1739 1528 SMART ultradead3 584 779 IPR014001 -
Psa3g1739 1528 Pfam DNA-binding domain 350 478 IPR020838 GO:0003677
Psa3g1739 1528 Gene3D - 826 895 IPR027417 -
Psa3g1739 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1371 IPR027417 -
Psa3g1739 1528 Coils Coil 427 466 - -
Psa3g1739 1528 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1490 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Psa3g1739 1528 PANTHER HELICASE SRCAP-RELATED 17 1490 - -
Psa3g1739 1528 Gene3D - 584 825 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1739 Psa-Chr3 154270051 154285865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1739 609 898 RAD5 or RAD16-like Gene Family AT5G43530 28.571 1.00e-25 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa3g1739 SNF2_N 1.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1739 K11665 - gmx:100810344 2523.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1739 3 154270051 154285865 Psa3g1739 3 154270051 154285865 ECH