Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1701 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCTGCGGAGACCTCAGAAGCTCTGGCGGCGGCGAACGATCAGCTTTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGAAAGAGGATGTACTGCCAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGTAAACGTAGCTCCATCTACCGTGGTGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCGTATGATGATGAGGAAGCAGCGGCTAGAGCGTATGACCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTCATTAATTTCCCAGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAACGTTTCGAGAGAAGAATACCTTGCGTCTTTGCGTCGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCAAAATATCGTGGACTCTCCAGTCGATGGGATCCATCATATGGCCGAATGACTGGATCGGATTACCTCAGTAGTATGCATTATGGTGCAGGGGATGATTCAGCTGCAGAAAGTGAATATGTTAGTGGTTTCTGCATAGAAAGAAAGTTTGATTTAACAAATCACATAAAATGGTGGGGATCTAACAAGAATCGACAACCTGATGCTGGAACAAAACATGGTTTTGCTGTAGATATTTACAGTGAACTGAAAACATTGGAACAGAAAGTCCAACCAACAGAACCATACAAGATGCCAGAGTTGGGCCGGCTCCACAATGAGAAAAAGCATAAAAGTTCTTCGATCTCTGCCTTAAGTATATTGTCGCAGTCTGCTGCTTACAAGAGCATGCAAGAGAAAGCGGCAAAAAGACAAGAAAATAGCATTGATAATGATGAGAATGAAAACAAAAATATAGTCAATGAGTTGGATCGTGGGAAGGCGGTAGAGAAACCCTCTAATCACGATAGTGGCAATGATCGACTTGACATTGCAATGGGAATGAGTGGGGCGTTGTCTCTTCAAAGAAATGTTTATCCATTGATGCCATTCTTGTCTGCACCACTTTTGACAGCCTACAACACTGTTGATCCACTGGTAGATCCTGTTCTTTGGACATCTCTCATTCCTATGCTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACAGAGACTGATTCAACGTACACTATGTTTCAATCAGAGGAGTAA 1236 0.4385 MASSSSDPGKSAETSEALAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSSRWDPSYGRMTGSDYLSSMHYGAGDDSAAESEYVSGFCIERKFDLTNHIKWWGSNKNRQPDAGTKHGFAVDIYSELKTLEQKVQPTEPYKMPELGRLHNEKKHKSSSISALSILSQSAAYKSMQEKAAKRQENSIDNDENENKNIVNELDRGKAVEKPSNHDSGNDRLDIAMGMSGALSLQRNVYPLMPFLSAPLLTAYNTVDPLVDPVLWTSLIPMLPAGLSRTAEVTKTETDSTYTMFQSEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1701 411 Coils Coil 288 315 - -
Psa3g1701 411 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Psa3g1701 411 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Psa3g1701 411 MobiDBLite consensus disorder prediction 292 310 - -
Psa3g1701 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 409 - -
Psa3g1701 411 MobiDBLite consensus disorder prediction 289 310 - -
Psa3g1701 411 SUPERFAMILY DNA-binding domain 59 127 IPR016177 GO:0003677
Psa3g1701 411 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Psa3g1701 411 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
Psa3g1701 411 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Psa3g1701 411 PANTHER BNAA03G19580D PROTEIN 8 409 - -
Psa3g1701 411 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1701 Psa-Chr3 152428733 152432899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1701 19 395 AP2-EREBP Transcription Factor Family AT2G41710 66.408 1.68e-172 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g1701 AP2 1.1e-13 CL0081