Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1687 ATGGGGACTCCACAATTCCCAGATCTAGGCAAGCATTGTACAGTTTCCGATTGCAGACTCATCGATTTCTTACCCTTCACTTGCGATCGCTGTAATCAGGTATATTGTTTGGAGCACCGAAGTTATATAAAACATCATTGTACAAAACCCAACAAACAAGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAAGTGTTCGATTAATTCCAGACCAAGATCCAAACATACTTTGGGAACACCATGTCAACACAGATTGTGACCCATCAAATTACGAAAAAGTCACAAAAAAGAAAAAGTGCCCTACCCAAGGATGCAGAGAGACACTAGTTTTCTCAAACACAATCAAGTGTAGAGACTGTGAGGTAGAACATTGTTTGAAGCACAGGTTTGGACCTGATCATAAATGTCCCGGACCCAAAAAGTTGGAAACTAGTTTTTCATTTATGAGTCTTTTGAATTTGAGTAGTGGTAGTAGTAGTAAAGAAGAATCGAAATCCAATTCAACTTGGTCGAATTGGACTTCAGGCCTTCTTGAGTTGGCTTCTAATTTGAGTGGAAAAAATCAAGTGGAGAAATGTCCACTTTGTGATGCAACGTTTTCATCGGTTACTAGTTTGGTAGATCATGCGAAAATAGTTCATGAAGGAAGTAGCATTAAGCGAAATGGGGTAAAGAAGGTGTCGATTTCTGCATGTCCCAAGTGTAGTAAAGGTTTTCTTGATCCGAATTCTCTTGTGGAGCATGTTGAGAGAGATCATGGTGGTAGTTCTTGA 777 0.3951 MGTPQFPDLGKHCTVSDCRLIDFLPFTCDRCNQVYCLEHRSYIKHHCTKPNKQDVTVVICPLCAKSVRLIPDQDPNILWEHHVNTDCDPSNYEKVTKKKKCPTQGCRETLVFSNTIKCRDCEVEHCLKHRFGPDHKCPGPKKLETSFSFMSLLNLSSGSSSKEESKSNSTWSNWTSGLLELASNLSGKNQVEKCPLCDATFSSVTSLVDHAKIVHEGSSIKRNGVKKVSISACPKCSKGFLDPNSLVEHVERDHGGSS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1687 258 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Psa3g1687 258 SUPERFAMILY beta-beta-alpha zinc fingers 193 250 IPR036236 -
Psa3g1687 258 ProSitePatterns Zinc finger C2H2 type domain signature. 194 215 IPR013087 -
Psa3g1687 258 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 187 258 - -
Psa3g1687 258 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 185 - -
Psa3g1687 258 Gene3D - 86 171 IPR035896 -
Psa3g1687 258 Gene3D - 2 57 IPR035896 -
Psa3g1687 258 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Psa3g1687 258 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Psa3g1687 258 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Psa3g1687 258 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Psa3g1687 258 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Psa3g1687 258 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Psa3g1687 258 Gene3D Classic Zinc Finger 186 258 - -
Psa3g1687 258 ProSitePatterns Zinc finger C2H2 type domain signature. 233 254 IPR013087 -
Psa3g1687 258 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Psa3g1687 258 SMART c2h2final6 231 254 IPR013087 -
Psa3g1687 258 SMART c2h2final6 192 215 IPR013087 -
Psa3g1687 258 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 187 258 - -
Psa3g1687 258 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 185 - -
Psa3g1687 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 220 IPR013087 -
Psa3g1687 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1687 Psa-Chr3 149800178 149801552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1687 1 258 C2H2 Transcription Factor Family AT2G41835 55.477 1.36e-106 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g1687 zf-AN1 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1687 - - cam:101511743 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1687 3 149800178 149801552 Psa3g1687 3 149800178 149801552 ECH