Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1677 ATGTGCTATGAGTTGGAGCGGTTAAAGCCAGTGCCTGCACCGTATCCTTCTCTATCTCCAGTTTTGACACGCGATTCTCGACCAGGAAAACACACCATGAATCACTTAACTGTTGGCACTGAAGATTCTTTTGCGAGTTTACTTGAGCTTGCCGCTAATAACGATGTGGAAGGGTTCAAACGGTTGATTGAGTTTGATCCTACGTCGGTGGATGAGATTGGGTTATGGTATGGTCGTCGCAAGGGATCGAAGCAGATGGTGAATGAGCGACGGACTCCTTTGATGGTTGCGGCAACCTATGGTAGTATTGATGTTATGAAACTGATTATTTCTCTATCTGATGTTGACATCAATAGGCCTTGTGGCCTTGATAAGAGCACTGCTCTTCACTGTGCTGCTTCAGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAGCTGCTTCTTGCAGCAGGGGCTGATCCCAATTCTGTGGATGCTAACGGGGATCGTCCGAAGGATGTTATTGTTTATCCCCCTAAGCTTGAATTTGTGAAAATCAGTCTTGAAGAGCTTCTTCTAACTGATGATGCTAGTGTTGGCTGTAATCTTAGGGTGATTACAAATTCCTTTAATACGTATTCTCCTCCTTTATCGGCTTCACCCGAGAACGGCTCTCCTTCTCCACCACCGGATCTTTTGTTGAGGTTAAAGTCAATTGATGTCCCTATTTCTCCTGCTGCATCCGAGAAGAAAGAATATCCTGTTGATCCTTCTCTTCCTGATATCAAAAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTGCGGCCTTGTTCGCGTGCTTATTCCCACGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCCCGGAGAAGGGACCCGAGAAAGTATCACTACAGCTGTGTTCCTTGTCCTGATTTTCGCAAGGGTGCTTGCCGGCGAGGGGATATGTGTGAATATGCTCACGGAGTTTTTGAGTGCTGGCTGCATCCTGCACAGTATAGAACCCGTCTCTGCAAGGACGGAATAAATTGCTCCAGAAGGGTTTGCTTCTTTGCCCACACCGCTGAAGAGCTTCGACCATTGTATGTTTCAACTGGTTCTGCTGTTCCTTCACCTCGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCCGGCTCACCTTCTTCTATGTCTGTTATGTCTCCTTCACCATTCACTCCACCCATGTCACCTTCTGGCAATGGCATTTCGCACAACTCTGGAGCTTGGCCCCAGCCAAACATCCCAGCATTGCATCTTCCAGGAAGTAATCTCCAGTCTAGTCGGTTGAGATCTTCACTCAATGCTAGAGATATTCATATGGATGATTTTGATATGTTATCTGATTATGATCAACAGCAACAACTCATCAATGAGTTGGCATGCCTCTCTCCACACCATTTGAATTCTAACAGTCTTAGCCGATCTGGTCGAATGAAGCCATTGAATCCATCAAATCTCGACGATCTCTTTTCCGCCGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGAATTCAACTGTTTTTTCTCCGACCCACAAATCAGCTGTCTTTAACCAGTTTCAGCAGCAGCAAAACATGTTGTCACCAGTGAATACAAATTTTTCTCCCAAAAATGTTGACCATCATTTATTGCAGGCAGCTTCTTATGGTGTTCAGCCTTCAGGTAGAATGTCTCCACGGAACGTGGAACCTATCTCCCCTATGAGCTCAAGGATGTCGATGCTGGCACAACGTGACAAGCAGCAACAGTTTCGCAGCCTAAGCTTCCGCGAGCACGGTTCTAACTCTATGCATGCACCTCCCGGCTCAGTCAATTCTTGGTCCAAATGGGAATCCCCCAACGGTAAGTTAGATTGGGCTCACAATGCAGATGAAGTAGGCAAGCTCCGTAGATCATCTTCTTTCGAGCTCGGGAACAATGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTCAAAGAATCTCCAACCGAGATCAAAGAGAAACTGACAACATCTATCCCAAATGTTGCGCCTGCGGGAACATCCGGTGAGGGATTGAATATGAATATGAATGCACAAATGGACTCTGTCGATCATGCTGTACTAGGAACATGGCTTGAACAGATGCAGCTTGACCATCTCGTGGCTCAGCAAAACTGA 2208 0.4629 MCYELERLKPVPAPYPSLSPVLTRDSRPGKHTMNHLTVGTEDSFASLLELAANNDVEGFKRLIEFDPTSVDEIGLWYGRRKGSKQMVNERRTPLMVAATYGSIDVMKLIISLSDVDINRPCGLDKSTALHCAASGGAENAVDAVKLLLAAGADPNSVDANGDRPKDVIVYPPKLEFVKISLEELLLTDDASVGCNLRVITNSFNTYSPPLSASPENGSPSPPPDLLLRLKSIDVPISPAASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSGAWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDDFDMLSDYDQQQQLINELACLSPHHLNSNSLSRSGRMKPLNPSNLDDLFSAESSSPRYADPTLNSTVFSPTHKSAVFNQFQQQQNMLSPVNTNFSPKNVDHHLLQAASYGVQPSGRMSPRNVEPISPMSSRMSMLAQRDKQQQFRSLSFREHGSNSMHAPPGSVNSWSKWESPNGKLDWAHNADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLTTSIPNVAPAGTSGEGLNMNMNAQMDSVDHAVLGTWLEQMQLDHLVAQQN* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1677 735 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 329 IPR000571 GO:0046872
Psa3g1677 735 Gene3D - 305 367 - -
Psa3g1677 735 ProSiteProfiles Ankyrin repeat region circular profile. 124 158 - -
Psa3g1677 735 SMART c3hfinal6 304 330 IPR000571 GO:0046872
Psa3g1677 735 SMART c3hfinal6 339 362 IPR000571 GO:0046872
Psa3g1677 735 Pfam Ankyrin repeats (3 copies) 50 158 IPR002110 GO:0005515
Psa3g1677 735 PANTHER UNKEMPT FAMILY MEMBER 33 732 IPR045234 -
Psa3g1677 735 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 33 732 - -
Psa3g1677 735 ProSiteProfiles Ankyrin repeat profile. 124 159 IPR002110 GO:0005515
Psa3g1677 735 ProSiteProfiles Zinc finger C3H1-type profile. 309 331 IPR000571 GO:0046872
Psa3g1677 735 SUPERFAMILY Ankyrin repeat 47 177 IPR036770 -
Psa3g1677 735 SMART ANK_2a 42 72 IPR002110 GO:0005515
Psa3g1677 735 SMART ANK_2a 89 119 IPR002110 GO:0005515
Psa3g1677 735 SMART ANK_2a 124 156 IPR002110 GO:0005515
Psa3g1677 735 Gene3D - 41 172 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1677 Psa-Chr3 149257674 149262410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1677 41 728 C2H2 Transcription Factor Family AT5G12850 52.735 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa3g1677 Ank_2 6e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1677 - - ccaj:109796653 1141.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1677 3 149257674 149262410 Psa3g1677 3 149257674 149262410 ECH