Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1675 ATGCAATTCCAAGTATCACTCGTCACTTGTTCTGTTCTACTATATCCTCTATGCGTTATGGATACATCATGCAAGAAATCTCCTTTGAAGCCATGGAAGAAAGGGCCGACAAGGGGCAAAGGTGGCCCCCAAAATGCTTCGTGTGAGTATCGAGGCGTTCGTCAAAGAACATGGGGAAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACTAGGCTATGGCTTGGTTCTTTCGCCACGGCTGAAGAAGCTGCTATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCTCACCTGCAACCTCATCCTATTTCATCTATTAAAACTGGAAAGTTCAAGTGGTTGCCTTCGAAGAAATTCATTTCAATGTTTCCTTCTTGTGGACTACTCAACGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGTTTAAGCAGAATGCAGTTGCTGCAAGTCAAACACTTCCTAGTTCATCGGACGATCCAAAGACAGAAGAAACTCAGAATGTACTACAGAGCGAGAAGAATCATGCAACTCAGAATGTACTAGACAGCAAAAAGAGTCATGCAGATGATCCTCTTCAGGAAAAAGATGTTCAGACATCGGTGAATAAGATGGTTGGAGATCTTCGGGAGGAGAAACCACAGATAGACCTACATGAGTTTCTTCAACAGCTGGGAGTACTGAAAGAAGAAACACACTCCTCAGAACAAACTGAGAGTTCAGGAAGTTCAACAGTGCATGAAGCTGTGTCACGAGATGACAATGATCATTTGGGAATATTTTCAGACATGAATATTAATTGGGAGGCATTGATTGACATGCATGGAATTGAAGATATTCAGGAATCAGAAACCACCCAGCACGAAGCATTTGACCCGAATGACCAGCTTAATTTCTCAACTTCCATTTGGAATTTTTAA 963 0.4226 MQFQVSLVTCSVLLYPLCVMDTSCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPHPISSIKTGKFKWLPSKKFISMFPSCGLLNVNAQPSVHLIHQRLQEFKQNAVAASQTLPSSSDDPKTEETQNVLQSEKNHATQNVLDSKKSHADDPLQEKDVQTSVNKMVGDLREEKPQIDLHEFLQQLGVLKEETHSSEQTESSGSSTVHEAVSRDDNDHLGIFSDMNINWEALIDMHGIEDIQESETTQHEAFDPNDQLNFSTSIWNF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1675 320 MobiDBLite consensus disorder prediction 244 264 - -
Psa3g1675 320 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Psa3g1675 320 MobiDBLite consensus disorder prediction 193 211 - -
Psa3g1675 320 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Psa3g1675 320 MobiDBLite consensus disorder prediction 162 192 - -
Psa3g1675 320 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Psa3g1675 320 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 20 317 - -
Psa3g1675 320 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Psa3g1675 320 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Psa3g1675 320 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Psa3g1675 320 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Psa3g1675 320 MobiDBLite consensus disorder prediction 162 215 - -
Psa3g1675 320 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 20 317 - -
Psa3g1675 320 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1675 Psa-Chr3 148822694 148823656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1675 25 320 AP2-EREBP Transcription Factor Family AT3G57600 48.161 2.93e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g1675 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1675 - - gmx:100801311 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1675 3 148822694 148823656 Psa3g1675 3 148822694 148823656 ECH