Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1674 ATGGAGAGAGGGGCGACTAAGAAGAAATCACCACCTCTCTCTTTGGACCAATTCATCTCTATCACTGCCCCTCTTCTCGACTTGGAAAAGGAGGCTGAGATATTGAGTTCAATCGCCACTGGTGCATCAAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATCCTCAATTTGAAATGTGTGGATGTTCAGACAGGACTTATGGGAAAGTCTCTGATCGAGCTCCAATCCACAAAAGCAGATGTTCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTAAAGGACTCATCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACGTATCACAGGATGAAAGAGGCATTAGTACAGTTGAGTAAAGGTGTGCATAAGGGTCCTGCTTCTGATCTAATCCCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGTCCAAGAAGGATGTATCTTTCACTTCCATTAATAGAAATCTTGATCACTCTCAGAAAGATGCAATTTCAAAAGCCCTATCGTCGAAGAATGTTTTTTTGCTACATGGACCTCCTGGAACGGGAAAAACTACAACTGTGGTGGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGTTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGGATTGGTCATCCTGCACGTTTATTGCCCCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGCCTTGCAAATGACATTCGGAAAGAAATGAAGGTATTGAATGGAAAGCTGCTAAAAACTAAAGAAAAAAATACAAGGAGGGAAATACAGAAGGAACTTAGGAGTCTATCTAGAGAAGAGCGGAAAAGGCAGCAGCTTGCTGTTACAGACGTAATTAAAACTGCAGATGTAATATTAACTACTCTGATTGGGGCTTTCACTAAGAAACTTGACCGCACTTCATTTGATTTGGTGATTATCGATGAAGCTGCTCAAGCACTTGAGATAGCATGTTGGATACCTCTGCTAAAGGGTACAAGATGTATCCTTGCAGGAGATCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAGGGCTTAGGAAGAACCCTCTTCGAACGACTTGCAGAACTGTATGGAGAGGAAGTCACATCTATGCTTACCGTCCAGTATCGGATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGGTAAAGGCTCATTCAAGCGTTGCTGCACATATGCTATATGATCTTGAGAATGTGAAGAGGACATCTTCAACTGAACCAACCATTCTTCTCATAGATACAACTGGATGTGATATGGAAGAAAAGAAAGATGAAGAGGACAGCACCCTTAACGAAGGAGAATCTGAAGTTGCTATGGCTCATGCAAAGCGATTAGTGCAAAGCGGGGTGCTTCCTTCTGATATTGGAATCATTACGCCTTATGCTGCTCAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGAACTCGCTGAAGGATATTGAAATCTCAACGGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGCAGGCGAATGAATGTGGCCGTGACACGAGCAAGAAGGCAATGCTGTATTGTCTGTGACACTGAGACGGTCAGTAATGATGGATTTCTAAAGCGGTTGGTTGAGTATTTTGAAGAGCATGGAGAATATCAGAGTGCATCTGAGTACCAGAATTAG 1941 0.4209 MERGATKKKSPPLSLDQFISITAPLLDLEKEAEILSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYHRMKEALVQLSKGVHKGPASDLIPVLFGERQPTVSKKDVSFTSINRNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILVCAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRSLSREERKRQQLAVTDVIKTADVILTTLIGAFTKKLDRTSFDLVIIDEAAQALEIACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGEEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHSSVAAHMLYDLENVKRTSSTEPTILLIDTTGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSNDGFLKRLVEYFEEHGEYQSASEYQN* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1674 646 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 12 644 - -
Psa3g1674 646 CDD DEXXQc_SMUBP2 196 444 - -
Psa3g1674 646 CDD SF1_C_Upf1 445 633 IPR041679 -
Psa3g1674 646 Gene3D - 443 646 IPR027417 -
Psa3g1674 646 Coils Coil 298 337 - -
Psa3g1674 646 SMART AAA_5 211 433 IPR003593 -
Psa3g1674 646 Pfam AAA domain 420 616 IPR041679 -
Psa3g1674 646 Gene3D - 24 427 IPR027417 -
Psa3g1674 646 Gene3D - 41 143 - -
Psa3g1674 646 TIGRFAM TIGR00376: putative DNA helicase 345 642 IPR004483 GO:0003677|GO:0005524
Psa3g1674 646 Pfam AAA domain 197 411 IPR041677 GO:0004386
Psa3g1674 646 PANTHER HELICASE WITH ZINC FINGER 2 12 644 - -
Psa3g1674 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 632 IPR027417 -
Psa3g1674 646 SMART ultradead3 193 444 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1674 Psa-Chr3 148814826 148823995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1674 170 380 Core DNA Replication Machinery Family AT1G08840 27.014 1.20e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1674 K19036 - gmx:100810545 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1674 3 148814826 148823995 Psa3g1674 3 148814826 148823995 ECH