Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1660 ATGGAGATAGAGAACAGTGAGATGAAGTCAAAGAAGATGGAAGAGTATGAAGTGATAGAACAAATTGGTAGAGGAGCGTTTGGTTCTGCTTTTCTTGTTCTTCATAAGTTTGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGCTTGGCCAAACAGGGAGAGAAATTCAAACGTACAGCACACCAAGAGATGAATCTGATTGCAAAACTGAATAACCCATATATTGTAGATTACAAAGATGCTTGGGTGGAGAAGGAGGACCATGTATGCATTATAACCGGCTATTGTGAAGGAGGTGACATGGCTGAGAGCATTAAAAAAGCTCGAGGATCATTTTTTCCGGAGGAGAAGGTCTGCAAATGGCTAACTCAACTGTTGATAGCTGTAGACTACTTGCATTCGAACCGTGTAATCCACCGGGATCTTAAGTGTTCCAACATATTCCTCACCAAGGACAACAATATTCGGCTAGGTGATTTTGGTCTTGCAAAGCGACTTAATGGAGAAGACCTCACTTCCTCGGTCGTTGGAACTCCAAATTACATGTGTCCTGAACTCCTCGCGGATATACCATACGGTTATAAATCTGATATATGGTCTCTCGGTTGCTGCATGTTTGAGATTGCTGCACATCAATCGGCATTTCGTGCTCCGGACATGGCCGGGCTTATCAATAAAATAAACCGATCCTCCATTTCTCCGCTGCCAATTGTTTATTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCTGCGGAATTGTTAAGACATCCACATTTACAACCATATGTTCTTCGGTGTCATAATGCATCATCTAATGTTCTTCCGGTATATCCCATAGTTAACTCAAAGGATAAAACAAAAAGATCTCCCAAAGCTAGTGGCGGCAAGGGCCATAACGACAGAGAAATGGGATTCGTAAATCGTTTGGAACGGGTTCATCCAATTGAGGGAAATGTCGATGTGCATACAAGCTATCGTCCTAACAATGCCGAGGTAACAATCTCAACGAGCACAGAATACAACCCCGAGACCAAGATGATTGATCATACGATTACGGGTTACATAGTTGAATCTTCTACTAGTATTAGCGGCTCGAAAGATGGATCAACAACTTCCGAATCAACTACTTGCAGTGTGTGCAAGGAGGACTATAAAATTAGACCGGCGAGGGAAATATCTAACAATGGATTCGCCTCAAAGAGCATAGACGATTCTCTGCATGAGAAAGAACACAGATTTGCTGTAGCGACTACCAAAGTCGAAGATACGTTCTCGAGCAAAGGCTTTGATAATGTTAAAGCACAGAGAGAAGATGCCAAACTTGATGACCTGAGGAAATCAACTACTTCCAGCGTGAGCCATAGCAGCACGGACAAAAATAATTCCGTTAACGAGGAAACTTCATCGCTAATTATCCATCCTCTCAGGGTTGAACACGACAGTACCGAATCCAGAGACTACTCAAAGAAAAACGAAAACCATGATTCTTGTACCGAAAAAGTCTTACATACGAACTGCTTGTCGTCAGAGAGTAACGATCATAGCAATATACTTGCAGTAAAGGAGGATGGCATCGAAAAACTTCACATTGTTTGCTCCACGCAGAAACAAGATGATAATGTAACAACAAATGGTGGTGACGACGGCGACAAAGCAATCGAGGATGCGTCGTTGGATAGTCCATGTCAGGAAAGAGCCGATGCATTGGAATCTCTCCTCGAGCTATGTGCTCAGCTACTCAAACAAGACAAACTCGAAGAACTCGCTGGTGTGCTAAGACCATTTGGGAAAGAAGCTGTATCATCAAGAGAAACCGCAATATGGCTGACAAAGAGCCTTATATCTGCTCAAAAGTTTAATCCTGAAAACTAG 1905 0.4236 MEIENSEMKSKKMEEYEVIEQIGRGAFGSAFLVLHKFEKKRYVLKKIRLAKQGEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHVCIITGYCEGGDMAESIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNGEDLTSSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQSAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCHNASSNVLPVYPIVNSKDKTKRSPKASGGKGHNDREMGFVNRLERVHPIEGNVDVHTSYRPNNAEVTISTSTEYNPETKMIDHTITGYIVESSTSISGSKDGSTTSESTTCSVCKEDYKIRPAREISNNGFASKSIDDSLHEKEHRFAVATTKVEDTFSSKGFDNVKAQREDAKLDDLRKSTTSSVSHSSTDKNNSVNEETSSLIIHPLRVEHDSTESRDYSKKNENHDSCTEKVLHTNCLSSESNDHSNILAVKEDGIEKLHIVCSTQKQDDNVTTNGGDDGDKAIEDASLDSPCQERADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLISAQKFNPEN* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1660 634 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1660 634 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1660 634 SUPERFAMILY Protein kinase-like (PK-like) 13 302 IPR011009 -
Psa3g1660 634 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1660 634 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Psa3g1660 634 MobiDBLite consensus disorder prediction 459 480 - -
Psa3g1660 634 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 482 617 - -
Psa3g1660 634 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 479 - -
Psa3g1660 634 CDD STKc_Nek 16 270 - -
Psa3g1660 634 MobiDBLite consensus disorder prediction 448 506 - -
Psa3g1660 634 MobiDBLite consensus disorder prediction 483 506 - -
Psa3g1660 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Psa3g1660 634 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Psa3g1660 634 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 482 617 - -
Psa3g1660 634 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 479 - -
Psa3g1660 634 Gene3D Transferase(Phosphotransferase) domain 1 96 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1660 Psa-Chr3 148061856 148067433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1660 9 271 MAP Kinase Kinase Kinase AT3G13530 33.208 1.48e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa3g1660 Pkinase 2.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1660 K08857 - gmx:100793379 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1660 3 148061856 148067433 Psa3g1660 3 148061856 148067433 ECH