Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1645 ATGGAACAAACTACAGTAAGATTAAGTGGATCCATTCACGACGGTACTGTACTTGATTCCGTTCAATTTAACGATGAAATCCAAGGAATTATGGTGCCGGCGCCGGCACCGGAAAACGCAAGCTCATTCACAGCTCTACTGGAGCTTCCTCCGACGCAAGCCGTAGAGCTTCTTCACTTGCCGGATTGCGACGGAACCGACTCCAGAAGACTGCCTTGCTGCCACGTCAGCGTGAATCAGAAACCCTATCTTCCGAGCTCTTCCGACGGTAATAATTTGACCTTCCCTACCAACGCTGCTTTGATAGAACGTGCCGCGAAATTCTCCGTGTTCGCCGGAGATATTTCTACGGGAGAGACGCGGCTGTTTCCGACAGTGTCTGGACCGAATTTGGAAAGTGTGAAGAACGAGCCTCAAGAGACTGATTCCAACCCTTGCTCGACGCAAGAGTGCGTTTCGGATCCAGCTGTTGAAAACAAGAATCAGAGAACCACGAAGAGAAAGGAGCGAGAGAAGAAGGCTAAAGCAAACTCGAAGAAGAGCAAGAGCATCGCCGACGAAACCTCCGGTGACGGTGAGAAGCTTCCCTACGTCCATGTTCGCGTTCGACGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAACGAGCTAGGAGAGAGAAGATTAATGCGCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCCGGAACGGCGTTGGTTCTTGATGAAATCATTAACCATGTGCAAACTCTACAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAACTTAGACAGGTTATTGGCTACTGATGGGCCATCTTTAATGGATGGCATCATACCTAGCATGGCTACGCCTCTTGTGTGGCCAGAAATCCCACTCAACAGTAACAGACAACATTATCAACAGCAGTGGCAAGTTGATGATGCATTCCATCAACCACTTTGGGGAAGGGAAGAAGACAACCATAATTTCATCACTCAGGAAAACTTACTTTTGAGTTATGACTCGTCGGCAAACTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1104 0.481 MEQTTVRLSGSIHDGTVLDSVQFNDEIQGIMVPAPAPENASSFTALLELPPTQAVELLHLPDCDGTDSRRLPCCHVSVNQKPYLPSSSDGNNLTFPTNAALIERAAKFSVFAGDISTGETRLFPTVSGPNLESVKNEPQETDSNPCSTQECVSDPAVENKNQRTTKRKEREKKAKANSKKSKSIADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLATDGPSLMDGIIPSMATPLVWPEIPLNSNRQHYQQQWQVDDAFHQPLWGREEDNHNFITQENLLLSYDSSANSASLHSNQLKMEL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1645 367 Coils Coil 246 266 - -
Psa3g1645 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 256 IPR011598 GO:0046983
Psa3g1645 367 MobiDBLite consensus disorder prediction 123 159 - -
Psa3g1645 367 Gene3D - 203 276 IPR036638 GO:0046983
Psa3g1645 367 MobiDBLite consensus disorder prediction 176 192 - -
Psa3g1645 367 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 367 IPR024097 GO:0006355
Psa3g1645 367 Pfam Helix-loop-helix DNA-binding domain 210 257 IPR011598 GO:0046983
Psa3g1645 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 275 IPR036638 GO:0046983
Psa3g1645 367 CDD bHLH_AtBPE_like 196 281 - -
Psa3g1645 367 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 15 367 - -
Psa3g1645 367 SMART finulus 212 262 IPR011598 GO:0046983
Psa3g1645 367 MobiDBLite consensus disorder prediction 123 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1645 Psa-Chr3 147281657 147287732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1645 18 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 54.155 2.61e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g1645 HLH 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1645 - - gmx:100814124 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1645 3 147281657 147287732 Psa3g1645 3 147281657 147287732 ECH