Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1642 ATGGATTTGAATTCTGGTTATGAAGAAGAACTTCAACAAAACCAAAGGTTGCTTCGTTTTCGCTCTACAACGAGCTCATCTAGTTATCGAGAATTTAGGGACAATAATCCTTTTAGTAATACAAATTCTTCTGGTGCAAGTTCAAGCATGCTTGTTGGTTCTTCTATGGGAATGAGAATGGATCAGCCAAGTAGTTCTTCTGCTGGTCATTTCTCCAACAATATCATCTCCTTTCAAAATGGTTATGACACTATGAAAGGAGTTGAAAACTATGATGGAGTGAATGAAAGTGATGGCGAACTTACTCTATCTATGAGCATATTGAAGAATCAAATCGGATTCTCCACAAGAAACCCTTCTTCTTCGTTGGGAACATTATCACAGAATTCCAAAATGGGTGAGGGTCATAAATTATTTTATGATTATAATGATCAGAATGTAGAGATGGGAAATCAAGTTGATACATTATCACATCACATGAGTTTGCCAAGAAAGTCATCAGAAATGTTTGTTATGGAGAATTTACATCAGTTCCCCGATTCTTCTGTTCCTAGTAGTAGTATTAGAGCAAAGCGAGGCTGCGCAACGCATCCTAGAAGCGTCGCGGAAAGGGTAAGAAGAACTCGAATAAGCGAACGAATGAAAAAGTTGCAGGAGCTTGTTCCAAACACTGACAAGCAAACTTGCACATCAGAAATGTTGGAATTGGCTGTAGAGTATATTAAAGAGCTTCAAAAACAATTAAAGATTATGAGTGCAAAAAGAGCTAAATGCAGATGCAAAAATCAGAAATGA 795 0.3723 MDLNSGYEEELQQNQRLLRFRSTTSSSSYREFRDNNPFSNTNSSGASSSMLVGSSMGMRMDQPSSSSAGHFSNNIISFQNGYDTMKGVENYDGVNESDGELTLSMSILKNQIGFSTRNPSSSLGTLSQNSKMGEGHKLFYDYNDQNVEMGNQVDTLSHHMSLPRKSSEMFVMENLHQFPDSSVPSSSIRAKRGCATHPRSVAERVRRTRISERMKKLQELVPNTDKQTCTSEMLELAVEYIKELQKQLKIMSAKRAKCRCKNQK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1642 264 SMART finulus 200 250 IPR011598 GO:0046983
Psa3g1642 264 PANTHER TRANSCRIPTION FACTOR BHLH130 143 263 - -
Psa3g1642 264 PANTHER TRANSCRIPTION FACTOR BHLH130 16 136 - -
Psa3g1642 264 Coils Coil 241 261 - -
Psa3g1642 264 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 143 263 - -
Psa3g1642 264 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 136 - -
Psa3g1642 264 MobiDBLite consensus disorder prediction 22 46 - -
Psa3g1642 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Psa3g1642 264 Pfam Helix-loop-helix DNA-binding domain 200 245 IPR011598 GO:0046983
Psa3g1642 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 261 IPR036638 GO:0046983
Psa3g1642 264 Gene3D - 195 264 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1642 Psa-Chr3 146998688 147000712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1642 64 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.357 9.14e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g1642 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1642 - - mtr:MTR_7g092540 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1642 3 146998688 147000712 Psa3g1642 3 146998688 147000712 ECH
Psa3g1642 3 146998688 147000712 Psa5g6620 5 554419836 554422079 ECH
Psa3g1642 3 146998688 147000712 Psa7g4889 7 427651973 427655215 ECH