Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1626 ATGATTCGCAACTTCCTTTACATCCTTCTCAATCTCGTTGTCTTTTCGTCAAATTTGATTTCTCAGAGCTTGGCGTTTACTCGTCCACCCGAAGTGGGGGCTCTACGGGATCTATACCAAGCCTTGAACTACTCAAATGCGCTCCATGGTTGGAATGGCAGTGATCCTTGTGAGGAGTCTTGGACGGGTGTTACTTGTTCTGGGTCATCAGTTATACGCCTACAAATTCAAGGGTTAAACCTTACTGGGAGTCTATGCAGGCTCTATCATCTACGGAATTTGAAGAAGCTTGATATCAGTTCAAATAACATAGTGGGCGAAATGCCATTTGGTTTACCCCCCAATGTCACTCATATGAATTTAAGCCACAATTTCTTAATTGGACCCATTGGTGACGTATTTACTGCCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCTCAGGAGATCTACCAAGTTCATTTGGTTCCTTGGCAAACCTTGCTAGATTGTTCTTGCAGAATAACAGATTCACTGGATCAGTCACCTACTTGGCAGAACTTCCACTTACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCCTTCTTCCACATCATTTTCAGAACATAAAAAAGTTATGGATTGGTGGGAATAAATTCCATGCGGTGGACAACTATCCTCCATTGACTTCTCCTGTGGGGACATTATCAGTTGAGCATAATATTAGTCGCCCGCCCACAACTAATACAAATGCCATCAAGAACTATGCTCCTCCCAAAGTACGTGAGCACAAGCATAAGAAGAAACAATTAGGTCCTGGAGGAATTGCTTTTATTGTTGCTGGAGGAACAGTAATCGCTACAGGTGTGGCACTCCTTATTGCAATCCGGTTAAACAAACTGCATGTTCAAAGCCAGAACTTGAATTACTCAGAAAGCAGTGATATCTCTTTTCATTCTCATCCAACCAGTGCAAGCATAGAGGTATCTTCTGCTGAACTAGACGACAGGCCACTACTCCTACCTATTAACGTTGCACCTCTTTTGGGTCCAATGAGATTTCCTTTCCTGCACCATAACAACATAGAGGAAACATCAAGAAGAAGTTATTCCAAAAGAGGCAGATCCACTAGAAGGACGAAAATCTATACCATTGCGGAGCTTCAGCTGGCTACTAACTTCTTCAACGAAGGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACAAAGCTAAATTTCCTGATGGCAAAATTTTGGCTGTGAAGATCATAAACATGGCGGGTTTGTCTTACAGAGAAGAGGAAATGTTCTTGGATGTCGTTTGCACAGCTTCCAAACTGAAGCACCCCAACATCATACCACTCAATGGTTACTGTTTGGAGCATGGAGAGCATCTTCTTGTTTATGATTACTTTGGAAATTTAACTCTAAATGATGCTCTTCATAGTGGAGTACGTGAAACACTATCGTGGGTCCAACGTCTTCAGATTGCTCTAAATGTTGCTCAGGCTTTGGACTATTTGCACTCAGCATGCTGCCCACCTGTGGCCCATGGTAATTTGAAGGCTGCCAACGTTCTACTGGATGAAAATTTGATGGCTCGTGTTTGTGACAGTAGCTTGGCTATTTTGAGACCATTGACGAAGGTTCTAGTGGCTAAAGTTATTGATAAGGCTACTGAGACTACAATTGCAGAGAGAGGCTACGCTACATCTGACCGTGGCCAAACAGGGCTCAGCAGAAGGAGAGATGTCTTTGCCTTTGGAGTATTGCTTCTGGAATTGTTAACAGGAAGGAAACCTTTCGACGGTGCTAGGCCAAGGGAAGAGCAATATCTGGCAAAATGGGCTTCCCCCAGGCTTCGTGATAGCGCGAGTTTGGAACAGATAGTAGATCCCAGTATGAAAACAAAATTACCATTCAAGGCTCTTTCTTGTTATGCTGATCTCATCTCCCTCTGTATACAGCCTTCAAAACAACTCCGTCCCCCAATGTCTGAAGTTGTGAACTCTCTTGTATCCTTTTCCCAAAAGTTCAACTTTGCAAAGACCAGTGTAGCAGACTGTACTGATCTATTTGAGCAGTCTCTCCGATCAGCCGACACACGCTTTAAAAGTTCGCCAACATTTAGCCATCTATCTGCTTGA 2142 0.4295 MIRNFLYILLNLVVFSSNLISQSLAFTRPPEVGALRDLYQALNYSNALHGWNGSDPCEESWTGVTCSGSSVIRLQIQGLNLTGSLCRLYHLRNLKKLDISSNNIVGEMPFGLPPNVTHMNLSHNFLIGPIGDVFTALDNLKEMDLSYNNFSGDLPSSFGSLANLARLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGLLPHHFQNIKKLWIGGNKFHAVDNYPPLTSPVGTLSVEHNISRPPTTNTNAIKNYAPPKVREHKHKKKQLGPGGIAFIVAGGTVIATGVALLIAIRLNKLHVQSQNLNYSESSDISFHSHPTSASIEVSSAELDDRPLLLPINVAPLLGPMRFPFLHHNNIEETSRRSYSKRGRSTRRTKIYTIAELQLATNFFNEGNLLGEGSLGPVYKAKFPDGKILAVKIINMAGLSYREEEMFLDVVCTASKLKHPNIIPLNGYCLEHGEHLLVYDYFGNLTLNDALHSGVRETLSWVQRLQIALNVAQALDYLHSACCPPVAHGNLKAANVLLDENLMARVCDSSLAILRPLTKVLVAKVIDKATETTIAERGYATSDRGQTGLSRRRDVFAFGVLLLELLTGRKPFDGARPREEQYLAKWASPRLRDSASLEQIVDPSMKTKLPFKALSCYADLISLCIQPSKQLRPPMSEVVNSLVSFSQKFNFAKTSVADCTDLFEQSLRSADTRFKSSPTFSHLSA* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1626 713 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 2 702 - -
Psa3g1626 713 SUPERFAMILY Protein kinase-like (PK-like) 366 670 IPR011009 -
Psa3g1626 713 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Psa3g1626 713 ProSiteProfiles Protein kinase domain profile. 392 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1626 713 Pfam Protein tyrosine and serine/threonine kinase 395 670 IPR001245 GO:0004672|GO:0006468
Psa3g1626 713 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Psa3g1626 713 Gene3D Transferase(Phosphotransferase) domain 1 471 694 - -
Psa3g1626 713 Gene3D Phosphorylase Kinase; domain 1 367 469 - -
Psa3g1626 713 SUPERFAMILY L domain-like 51 219 - -
Psa3g1626 713 PANTHER OS01G0253100 PROTEIN 2 702 IPR045271 GO:0004714|GO:0006468
Psa3g1626 713 Gene3D Ribonuclease Inhibitor 28 366 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1626 Psa-Chr3 146178923 146183976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1626 27 713 Strubbelig Receptor Gene Family AT5G06820 49.516 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Psa3g1626 PK_Tyr_Ser-Thr 2.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1626 - - gmx:100775254 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1626 3 146178923 146183976 Psa3g1626 3 146178923 146183976 ECH
Psa3g1626 3 146178923 146183976 Psa6g2115 6 145880174 145884081 PCT