Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1624 ATGGATTCAGGTAACTCTTCCTCAGAAGAGTCCTCTCTTAATGGCTTGAAATTCGGCCAACGTATCTATTTCGAAGATACATCTCTTGCAAACTCCTCCACTGCTAATGCAAATGCTTCTTCTTCTGCTGGTTCCAAGAAAGGAAGAGGTGGGTCGTTTCAACATTCTCAACCTCCTAGGTGTCAAGTTGAGGGTTGTAAAGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGACACAAAGTTTGTAGCATGCACTCTAAATCACCTACTGTTACTGTTTCTGGTCTACAACAAAGGTTTTGTCAACAGTGTAGCAGGTTTCATCACCTTGCTGAGTTTGATCAAGGAAAAAGAAGCTGCCGCAGACGACTAGCTGGTCATAATGAGCGTCGCAGAAAGCCCCCACCCAACTCTCTCTTAACTTCGCGTTTTGCCAGACTTTCGTCATCTGTTTTTGATAACAGCGGCGGAGGTGGCAGCTTCCTGATGGAATTTGCTCCACACCCGAAACTTAGTCTGAGGAATTCACTTCCATCCTCTGGAAATCAAACCACAACACCCGGTTGGCCTTGGCCGGGAAACTCGGAGTCGCCATCTAACAACTTTTTCTTGGAAGGTTCGGTGGGTGGGACAAGCTTCCCTGGTGCCAGGCATCCTTCCGAGGAAAGTTACACCGGAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACACAGAACCAAGTCTTGGATTGAATAACATGCTGAATTTCAACGAGACACCCATGACACAACTTGCTACATCTTCTCATGGTGTAGCCATGCATCAGCTTCCAAACACTTCATGTTATTTCAAGGACATTGATCCCAGTAACCTATCACACGAGGCTGTCCCCGATCTTGGTCTAGGTCATGTGTCGCAGCCTCTCGATAGCCAACTTCACGGTAATCTTGATCTGTCGCAGCAAGGAAGGAGGCATTATATGGATGTAGAACACTCCAGGGCCTACGAATCTTCTCAATGGTCACTGTAA 1041 0.4621 MDSGNSSSEESSLNGLKFGQRIYFEDTSLANSSTANANASSSAGSKKGRGGSFQHSQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHHLAEFDQGKRSCRRRLAGHNERRRKPPPNSLLTSRFARLSSSVFDNSGGGGSFLMEFAPHPKLSLRNSLPSSGNQTTTPGWPWPGNSESPSNNFFLEGSVGGTSFPGARHPSEESYTGVTDSSCALSLLSNQTWGSRNTEPSLGLNNMLNFNETPMTQLATSSHGVAMHQLPNTSCYFKDIDPSNLSHEAVPDLGLGHVSQPLDSQLHGNLDLSQQGRRHYMDVEHSRAYESSQWSL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1624 346 Pfam SBP domain 61 134 IPR004333 GO:0003677
Psa3g1624 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 343 IPR044817 GO:0003677
Psa3g1624 346 SUPERFAMILY SBT domain 59 140 IPR036893 GO:0003677|GO:0005634
Psa3g1624 346 ProSiteProfiles Zinc finger SBP-type profile. 58 135 IPR004333 GO:0003677
Psa3g1624 346 MobiDBLite consensus disorder prediction 34 58 - -
Psa3g1624 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 2 343 - -
Psa3g1624 346 Gene3D - 51 122 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1624 Psa-Chr3 146111962 146115368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1624 16 346 SBP-box Gene Family AT2G42200 43.611 1.19e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa3g1624 SBP 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1624 - - gmx:100807165 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1624 3 146111962 146115368 Psa3g1624 3 146111962 146115368 ECH